Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30132
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    29   0.56 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.3  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   1.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   2.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   6.9  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -1

Query: 293 KRNSTVSQHVHRINY-FNFHQI 231
           KR S+V+ +VHR+NY +N+H +
Sbjct: 20  KRCSSVTDNVHRVNYCYNYHTV 41


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 139 VFTIENVQHVSPFI--NIFCETVNSRHVKK 222
           VF IEN++H+ P++  NI  ET+    V+K
Sbjct: 495 VFLIENLRHMFPYVTKNIISETLGKVAVRK 524


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 349 HSLEVRHFETGFIYLLHQKRGTALFHNTFTE 257
           H   V++F  GF+  L +  GT +++NT  E
Sbjct: 119 HYSFVKNFGPGFVSTLQESFGTGVYYNTHVE 149


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 473 KKNEVNFDKIFNQ 511
           KKN VNFD +FNQ
Sbjct: 123 KKNPVNFDSVFNQ 135


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 269 VVKQCCSSFLVEEVNKSCLKMADLEAVLADVSYLMAMEKS 388
           VVK CC+  L+ E  ++    A  +A + + + L A E++
Sbjct: 314 VVKTCCTRCLLRERKRNARSQATKDACMPNYTKLKAYERN 353


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 424 DFFASSCCRSAFRFLHSHQVAHVCQHSLEVRHFETGFIYLL 302
           DFF+S C  S  + +  H       HSL +   +    YL+
Sbjct: 339 DFFSSKCIMSGSKIIELHMEKVKSLHSLSIICLDMAISYLM 379


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 559 RTSATIKILRRDKTVRETR 615
           R +ATI ILR DKT  E R
Sbjct: 173 RLTATINILRSDKTAEEIR 191


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 416 KKIVLPDPSVRSVMHKYMEKKNEVNFDKIF 505
           +K++L  P+V S +    ++  E +FD++F
Sbjct: 514 QKLILKGPNVESSLGHTYDRNYEFSFDRVF 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,696
Number of Sequences: 5004
Number of extensions: 50343
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)