Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30132
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     31   0.76 
06_03_0237 + 18576317-18576412,18577273-18577778,18577906-185780...    29   4.1  
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317...    29   4.1  
01_05_0272 + 20280557-20281220,20281799-20281938,20282035-202821...    29   4.1  
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    28   7.1  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +2

Query: 251 NLFCERVVKQCCSSFLVEEVNKSCLKMADLEAVLADVSYLMAMEKSKCTPAARASKK 421
           N+F +++V++CC   +    N   +++ D+E VL+D   L   E +K   AA ASKK
Sbjct: 630 NMFIDKIVRKCCDLGVQMNRNPCIVQLLDME-VLSDPHQLFE-ELNKAKQAA-ASKK 683


>06_03_0237 +
           18576317-18576412,18577273-18577778,18577906-18578024,
           18578409-18578763,18578803-18578866,18578967-18579231,
           18579354-18579529
          Length = 526

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 392 CTPAARASKKIVLPDPSVRSVMHKYMEK-KNEVNFDKIFNQVLGYLLFKEFCEQT 553
           CT   RA   + L       ++ +Y +K K++V FD+   +  G ++FK+   QT
Sbjct: 472 CTHMLRAFVHVQLEKIPAAYILKRYTKKVKSDVPFDRHDREATGPMVFKKITGQT 526


>01_06_1016 +
           33830751-33831387,33831470-33831527,33831620-33831703,
           33831819-33831954,33833191-33833451
          Length = 391

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 296 LVEEVNKSCLKMADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHK 463
           L + + KS    A L+   A  +   + EKS+    ARA+   +LP P+  SV  K
Sbjct: 36  LKKSLQKSLSMPASLDNAAAATTCAASPEKSRAADFARAAAASLLPPPTPASVSAK 91


>01_05_0272 +
           20280557-20281220,20281799-20281938,20282035-20282124,
           20282249-20282354,20282544-20282695,20282776-20282873,
           20282948-20283086,20283223-20283321,20283411-20283575
          Length = 550

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 297 RKEEQHCFTTRSQNKLFQLPPDSHNLLHMTT 205
           R +E  C  TR       LPP+S   LHMTT
Sbjct: 396 RSDEDECLATRLVGTPGYLPPESVLELHMTT 426


>09_04_0072 +
           14323449-14324274,14324351-14324447,14325175-14325277,
           14325359-14325412,14325495-14325569,14325597-14325650,
           14325687-14325755,14325840-14325923,14326115-14326312,
           14326428-14326927,14327011-14327140,14328226-14328317,
           14328776-14328954,14329114-14329316,14329398-14329499,
           14330047-14330209,14330690-14330979,14331088-14331225,
           14331311-14331390,14331510-14331606,14331685-14331814,
           14331921-14332162
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 350 LADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKY 466
           L D+  L+A   S C    R+SK +VL + + + ++H++
Sbjct: 747 LPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQF 785


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,270
Number of Sequences: 37544
Number of extensions: 318061
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)