Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30132
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   5e-21
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              31   0.78 
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  29   4.1  
SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_24767| Best HMM Match : DUF1566 (HMM E-Value=2.5)                   28   5.5  
SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)                    27   9.6  

>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 57/95 (60%), Positives = 64/95 (67%), Gaps = 7/95 (7%)
 Frame = +2

Query: 326 KMADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPS-VRSVMHKYMEKKNEVNF--- 493
           KMADLEAVLADVSYLMAMEKSK TPAARASKKI LPDPS V        + K+ + F   
Sbjct: 142 KMADLEAVLADVSYLMAMEKSKSTPAARASKKICLPDPSYVEKSPLPLSQTKDFIAFWCR 201

Query: 494 ---DKIFNQVLGYLLFKEFCEQTSDEPVPQLKFYE 589
                  + +  +LLFKEFC+   DEPVPQL FYE
Sbjct: 202 LSRLSYVSSLQRFLLFKEFCKCQCDEPVPQLDFYE 236


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 298 GGGGK*ILSQNGGPRGCAGRRE-LLDGYGEIEMHSCSTS*QKNRSSRSKCSECNAQIHGK 474
           GGGG+ I   +GG  G A   + +L+G G         S   +RS   KCS  + ++  +
Sbjct: 140 GGGGRYISPGDGG--GVAAPFDAMLEGKGIGSRRGSQISVHSDRSMSMKCSHAHPRVRAE 197

Query: 475 EKRSEL*QNIQSSIRL 522
           +K S   Q+ Q  IR+
Sbjct: 198 KKMSVREQDYQIQIRI 213


>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 641

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 311 LPPPPEKRNSTVSQHVHRINYFNFHQIVITFFT*RLFTVSQNMLMNGD 168
           LPP   K+   VS+  +     +FH +    F   LF + Q MLM GD
Sbjct: 383 LPPEETKQEGAVSRQTYAAYLRSFHDLGTGVFLIFLFAMCQVMLMFGD 430


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 379  GEIEMHSCSTS*QKNRSSRSKCSECNAQIHGKEKRSEL*QNIQSSIRL 522
            G++ + S     +K   S+ K +  N  +HG+E R ++  N   ++RL
Sbjct: 2467 GKLRVQSQKGLSKKTEKSKEKSAHQNGTLHGEEYRPDISDNTIETVRL 2514


>SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 501 YSIKY*VIYYLRNSV-NRRQTNQCHN*NFTKR*NCSRNKNAWKKG 632
           Y +KY  +Y  R  V N   TNQC     TK+    +NKN+  +G
Sbjct: 71  YLLKYRRVYTSRCQVPNENSTNQCQENPPTKQQRQQQNKNSRPEG 115


>SB_24767| Best HMM Match : DUF1566 (HMM E-Value=2.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +2

Query: 347 VLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKNEVNFDKIFNQVLGYL 526
           +L  VSY  A+  SK      + +K+++P+P    +  +Y+  +NE+   ++   V G+ 
Sbjct: 184 ILQAVSYAHAL-CSKLDSQKESPEKLLIPEPCTLPLAIRYVGSENEIEI-RLDEMVRGFA 241

Query: 527 LFKEFC 544
           +    C
Sbjct: 242 VAMRTC 247


>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 512 VLGYLLFKEFCEQTSDEPVPQLKFYEEIKLFEKQECVEE 628
           +L + LF  +C+  + +P P+   Y+E  L  K  C EE
Sbjct: 197 LLCHYLFP-YCDDAASQPQPRPLCYDECDLLRKDVCSEE 234


>SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 379 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 284
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 104 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 135



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 379 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 284
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 114 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 145



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 379 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 284
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 124 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 155


>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 699

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 377 MEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKNEVNFDKIFNQVL 517
           +E+ K +P  +A+ K + PD    SVM +  + K +++  ++ NQ L
Sbjct: 547 LEEGKASPGDQAAWKNLSPDAGDPSVMKQVQDVKAQLSSSELKNQRL 593


>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 439 WIWKNDFFASSCCRSAFRFLHSHQVAHVCQHSL 341
           W W   +  ++ C  A   +H+H +  +C H+L
Sbjct: 73  WQWVIWWSLTTMCNPALTTMHNHTLTTMCNHTL 105


>SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)
          Length = 430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 285 QHCFTTRSQNKLFQLPPDSHNLLHMTTVHRFTEYVDEW 172
           Q C   R+Q +   L P  H+L  + T H FT++ + W
Sbjct: 166 QICNAFRNQQQKETLHP--HDLPGLPTTHEFTQFAEAW 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,496
Number of Sequences: 59808
Number of extensions: 356158
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)