Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30132
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 230 LSGGS*NNLFCERVVKQCCSSFLVEEV 310
           +SGG+ N+   E V ++C   +L +++
Sbjct: 309 VSGGALNDCHAEVVARRCLCEYLYKQL 335


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 143 KTIFNNI*VNKNRYFNF 93
           KTI NN   N N Y N+
Sbjct: 88  KTIHNNNNYNNNNYNNY 104


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 143 KTIFNNI*VNKNRYFNF 93
           KTI NN   N N Y N+
Sbjct: 88  KTIHNNNNYNNNNYNNY 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 312 INPVSKWRTSRLCWQT 359
           IN V++W   R  W T
Sbjct: 568 INTVAEWEPPRALWPT 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,534
Number of Sequences: 438
Number of extensions: 3380
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)