Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30132
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ...    30   1.5  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    28   5.9  

>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative similar to
           3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
           [Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
           GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
           contains InterPro accession IPR002155: Thiolase
          Length = 443

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 317 SCLKMADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKNEVNFD 496
           +CL          D   ++A +++    A R S K   PD  + SV+   +EK N VN  
Sbjct: 29  ACLSKDSAAYQYGDDVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTN-VNPS 87

Query: 497 KIFNQVLGYLL 529
           ++ + V+G +L
Sbjct: 88  EVGDIVVGTVL 98


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 470 EKKNEVN-FDKIFNQVLGYLLFKEFCEQTSDEPVPQLKFYEEIKLFEKQECVEER 631
           ++K E+N  +K  N+++  + +K+F +      VP ++ YEE +L   ++  EER
Sbjct: 783 KRKTEMNKLEKRMNEIVDRI-YKDFSQSVG---VPNIRVYEETQLKTAEKEAEER 833


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,526
Number of Sequences: 28952
Number of extensions: 259863
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)