Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30131
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000382587 Cluster: COG0583: Transcriptional regulat...    34   2.6  
UniRef50_P25769 Cluster: Uncharacterized protein in nifH1 5'regi...    34   3.5  
UniRef50_UPI0000F1E6CE Cluster: PREDICTED: hypothetical protein;...    33   4.6  
UniRef50_Q64SN4 Cluster: Putative cysteine proteases; n=2; Bacte...    33   6.0  
UniRef50_Q2KYL1 Cluster: Putative exported protein precursor; n=...    33   8.0  
UniRef50_Q7SHW3 Cluster: Putative uncharacterized protein NCU006...    33   8.0  
UniRef50_Q2M3G4 Cluster: Protein Shroom1; n=12; Eutheria|Rep: Pr...    33   8.0  

>UniRef50_UPI0000382587 Cluster: COG0583: Transcriptional regulator;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep: COG0583:
           Transcriptional regulator - Magnetospirillum
           magnetotacticum MS-1
          Length = 181

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 356 RPCASPADYTRWSLQTPTSARAKRAP 279
           RPCASPA   RW    PT+A   RAP
Sbjct: 22  RPCASPAFVERWFPDGPTAAALSRAP 47


>UniRef50_P25769 Cluster: Uncharacterized protein in nifH1 5'region;
           n=1; Methanothermococcus thermolithotrophicus|Rep:
           Uncharacterized protein in nifH1 5'region -
           Methanococcus thermolithotrophicus
          Length = 97

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -2

Query: 210 LLVRSNTIRPIDYPYSSFHHNLSLLFII 127
           L+  SNTI+P+ YPYS+   N S+LFII
Sbjct: 48  LMHNSNTIKPLIYPYSNLRDN-SILFII 74


>UniRef50_UPI0000F1E6CE Cluster: PREDICTED: hypothetical protein; n=2;
            Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
            rerio
          Length = 1235

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
 Frame = -1

Query: 478  SGIAYRNSDQTKLPSKNI*RHGSPADQQSQLPS*CASTAWIARVHHP---LTTHDGLYRP 308
            S  + R+ D   L      RHG  A   S   S     + I R   P   + T  G + P
Sbjct: 1022 SASSERSQDDESLMGSRSDRHGDDALSLSSSSSPLLRKSKIPRPVTPTSSMETLTGQFMP 1081

Query: 307  RPPPEPNAHRAPTDYLSCLKRHRFLPG----YDYVIATGTVEH--NTADRLSLLEFSPQF 146
            RPPP     R+  D    L+R+R   G     D +     + H  +T         SPQ 
Sbjct: 1082 RPPPGKPPSRSNVD--GRLRRYRIRAGSTSDSDLLTCLAQLMHASSTHGSPQHSSSSPQH 1139

Query: 145  KLALH-HHHLHQ 113
              A H  HHLHQ
Sbjct: 1140 VSARHIFHHLHQ 1151


>UniRef50_Q64SN4 Cluster: Putative cysteine proteases; n=2;
           Bacteroides fragilis|Rep: Putative cysteine proteases -
           Bacteroides fragilis
          Length = 446

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -1

Query: 340 PLTTHDGLYRPRP--PPEPNAHRAPTDYLSCLKRHRFLPG--YDYVIATGTVEHNTADRL 173
           P   H  LY  +   P EP       +Y SC + H   PG    Y  A    +  TA+R 
Sbjct: 194 PSCRHSTLYMEKQAIPGEPTVFSETFEYTSCAEWHPLKPGNILPYDTAGALYKEYTAERE 253

Query: 172 SLLEFSPQFK 143
           + + F+P+ K
Sbjct: 254 THIRFTPRIK 263


>UniRef50_Q2KYL1 Cluster: Putative exported protein precursor; n=1;
           Bordetella avium 197N|Rep: Putative exported protein
           precursor - Bordetella avium (strain 197N)
          Length = 628

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 359 DRPCASPADYTRWSLQTPTSARAKRAPRTHGLLELPQETPISTGLRL 219
           D P  SPAD TRW+ +  T  RA    R  G + L  +  +S GL L
Sbjct: 562 DLPVPSPADITRWNEEYQTFGRASINKR--GKVVLQNDVDVSDGLSL 606


>UniRef50_Q7SHW3 Cluster: Putative uncharacterized protein
           NCU00691.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU00691.1 - Neurospora crassa
          Length = 794

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 576 LTKSNNRVYKVHYSAARARTTVVHQTSNLLCTNQA*LTGTQIKQNF-RVKISNATALQPT 400
           LT S      ++ ++AR+ T V HQ SN +C+N +  TGT+          SN++A  P 
Sbjct: 66  LTDSLGNPTALNATSARSSTLVAHQRSNTICSNDS-TTGTETATGTDNDMASNSSAAMPA 124

Query: 399 S 397
           +
Sbjct: 125 T 125


>UniRef50_Q2M3G4 Cluster: Protein Shroom1; n=12; Eutheria|Rep:
           Protein Shroom1 - Homo sapiens (Human)
          Length = 852

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 412 SPADQQSQLPS*CASTAWIARVHHPLTTHDG-LYRPRPPPEPNAHRAP 272
           SPAD + ++   C   AW+  +   +   +  L R R PP+P+A + P
Sbjct: 364 SPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGP 411


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,939,325
Number of Sequences: 1657284
Number of extensions: 13588627
Number of successful extensions: 44290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44145
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)