Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30131
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.1  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   3.1  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   4.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.5  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   5.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   7.3  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   7.3  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 183 PIDYPYSSFHHNLSLL 136
           PID+ Y+S HHNL+ L
Sbjct: 188 PIDFDYASVHHNLTAL 203


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 346 HHPLTTHDGLYRPRPPPEPNAHRAPTD 266
           HH L  H+G    R P +   H+ P D
Sbjct: 344 HHELEEHEGPEHHRGPEDKEHHKGPKD 370


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 627 LMGNFKVIKALNCFNTILTKSNNRVYKVHYSAARARTTVVHQTSNLL 487
           L  N  +++ALN  NT++T +NN +  +     R    +    S+LL
Sbjct: 174 LYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAFIESVMSSLL 220


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 584 IPF*PNQTIGYTKFTIQQPEHVPQSFIKLQIYSVQIRHSLQELRSNKTSE*KYLTPRLSS 405
           IP  P +T  +   +    EH P +F    IY+    H  +E +S+K+S+  +  P  + 
Sbjct: 7   IPITPTRTPCFFNISSSFNEHSPLNFYDEPIYNFSSGH--EENQSHKSSKLTFFKPSNTK 64

Query: 404 R 402
           R
Sbjct: 65  R 65


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -2

Query: 639  YTLRLMGNFKVIKALNCFNTILTKSNNRVYKVHYSAARARTTVVHQTSNLLCTNQA*LTG 460
            Y LR +G     K    F TIL+ + NR        ARA    V  TS+   +    L  
Sbjct: 1835 YLLRDVGLELFFKDGRSFLTILSNTKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGK 1894

Query: 459  TQIKQNF-RVKISNATALQPT 400
               K NF   K++NA +   T
Sbjct: 1895 ANGKSNFLSSKLANALSFSTT 1915


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 580 HFNQIKQ*GIQSSLFSSQSTYHSRSSNFKFTLYKSG--IAYRNSDQ 449
           HF  IK  G    +    S Y   +   +   YKSG  I  +N+D+
Sbjct: 637 HFRDIKMTGYDDEIIQDLSRYIEGNDEIEKESYKSGLDIVMKNTDE 682


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 385  PS*CASTAWIARVHHPLTTHDGLYRPRPPPEPNAHRAPTDY 263
            PS  +S+ W  R HHP      L++  PPPE   H++ + +
Sbjct: 1244 PSPPSSSVWNKREHHPKPF--SLHQV-PPPESLIHKSKSKF 1281


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
 Frame = -3

Query: 308 PTSARAKRAPRTHGLLELPQETPI--STGLR------LRN--SYWYGRTQYGR*T 174
           P+  R   AP +H  +E P   P+   + +R      L+N  +Y +GRT+YG+ T
Sbjct: 83  PSLRRVSSAPDSHKGVEAPPPRPLINMSNIRKAQVKILKNPGNYIFGRTEYGKRT 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,023
Number of Sequences: 5004
Number of extensions: 56126
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)