Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30131
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 29 2.5
09_06_0313 + 22240971-22242176 29 4.3
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 29 4.3
03_02_1036 + 13573160-13573243,13573361-13573684,13573880-135741... 29 4.3
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 28 5.7
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 28 5.7
01_06_0803 - 32100502-32101425 28 7.5
11_08_0055 - 28095996-28096934 27 9.9
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 27 9.9
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539... 27 9.9
08_02_0409 + 16837792-16837896,16839256-16839328,16839376-168397... 27 9.9
08_02_0197 - 14150787-14151440 27 9.9
07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540 27 9.9
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 295 EPNAHRAPTDYLSCLKRHRFLPGYDY 218
E + +R P LSC K HRFLP Y
Sbjct: 112 ELSYNRGPQCILSCAKEHRFLPKQGY 137
>09_06_0313 + 22240971-22242176
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 413 LSSRPAIAIALMMRIHRVDRPCASPADYTRWSLQTPTSARAKRAPRTHG 267
+ + PA+ A + R V PCA+P W T A +R PR +G
Sbjct: 1 METSPALRPAHIPRSTAVRPPCATPFSRAHWH---ATCAAIRRVPRVNG 46
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 163 EFSPQFKLALHHHHLHQPRLV--CVMLAFFLAY 71
EF + K+ H HHL+ RL+ C+ + FL Y
Sbjct: 330 EFLAELKVLTHVHHLNLVRLIGYCIESSLFLVY 362
>03_02_1036 +
13573160-13573243,13573361-13573684,13573880-13574143,
13574662-13574793,13574919-13575620
Length = 501
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = -3
Query: 431 KYLTPRLSSRPAIAIALMMRIHRVDRPCASPADYTRWSLQTPTSARAKRAPRTHGL---- 264
+ L+P S P +IA + R RP A+ TPT +R++R+P H
Sbjct: 428 RLLSPIPSMSPIPSIASDIVFARSSRPAAAQRSPRVKGPMTPTRSRSRRSPGRHSFGSEA 487
Query: 263 ----LELPQETPI 237
L++ Q TPI
Sbjct: 488 ALHQLQMEQYTPI 500
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 163 EFSPQFKLALHHHHLHQPRLV--CVMLAFFLAY 71
EF + K+ H HHL+ RL+ CV FL Y
Sbjct: 341 EFLAELKVLTHVHHLNLVRLIGYCVENCLFLVY 373
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 373 ASTAWIARVHHPLTTH-DGLYRPRPPPEPNAHRAPTDYLSCLKRHRFLPG 227
A+ A +R+ +P TTH L P PPP + A L+ + +RF PG
Sbjct: 33 AAAAAASRLQNPTTTHYPNLPPPAPPPSTSLVAAEEASLAPRRTYRF-PG 81
>01_06_0803 - 32100502-32101425
Length = 307
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 181 DRLSLLEFSPQFKLALHHHHLHQPRLVCVM 92
D+L L+F PQ L + HHH H P + +M
Sbjct: 112 DKLPPLQFPPQDHLCMGHHH-HLPSAMPLM 140
>11_08_0055 - 28095996-28096934
Length = 312
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 266 LLELPQETPISTGLRLRNSYWYGRTQYGR 180
LL Q+T G+ L NSY+ +T YGR
Sbjct: 278 LLPAVQKTESYAGVTLWNSYYDSKTHYGR 306
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 574 NQIKQ*GIQSSLFSSQSTYHSRSSNFKFTLY--KSGIAYRNSDQTKLPSKNI 425
NQ Q +QSS+ + TYH+ S+ F+ L + +++D ++P ++
Sbjct: 686 NQESQHSVQSSVSTRTQTYHTDSTKFQLQLIDDSNTTIEQSNDTIRVPQSSL 737
>09_04_0094 -
14552970-14553182,14553275-14553679,14553780-14553902,
14554156-14554367,14554486-14554514,14554661-14555166
Length = 495
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 139 ALHHHHLHQPRLVCV 95
A+HHHHL PRL+ V
Sbjct: 4 AIHHHHLLPPRLLSV 18
>08_02_0409 +
16837792-16837896,16839256-16839328,16839376-16839730,
16839995-16840106
Length = 214
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -3
Query: 548 KFTIQQPEHV-PQSFIKLQIYSVQIRHSLQELRS--NKTSE*KYLTPR----LSSRPAIA 390
K +QQ + PQ F KL++ V+ LQE RS + + E K +P+ L RPA
Sbjct: 116 KLQVQQSSSILPQDFPKLEVLPVEKPTKLQERRSPQHVSPELKQGSPKMERPLLPRPATF 175
Query: 389 IALMM 375
I +M+
Sbjct: 176 IDVML 180
>08_02_0197 - 14150787-14151440
Length = 217
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 214 IATGTVEHNTADRLSLLEFSPQFKLALHHHHLHQPRLVCV 95
+A V H LS +P A+HHHH H+P + +
Sbjct: 5 MAPRLVHHPCCMMLSKNPRTPPPPPAMHHHHAHKPLITAL 44
>07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540
Length = 451
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -1
Query: 415 GSPADQQSQLPS*CASTAWIARVHHP-----LTTHDGLYRPRPPPEPNAHRA 275
G D+QS + S ++ + +P L HD RPR P+P+ H A
Sbjct: 55 GEDEDEQSDEMNIDPSIQFVVNMRNPSQYTILRHHDQFLRPRDTPDPHFHTA 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,646
Number of Sequences: 37544
Number of extensions: 384393
Number of successful extensions: 1558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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