Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30131
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08) 30 1.9
SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9) 29 2.5
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 29 3.3
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.4
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
Length = 910
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 418 HGSPADQQSQLPS*CASTAWIARVHHPLTTHDGLYRPRPPPEPNAHRAP 272
H S D Q P TA + P T+HD + P P P P + P
Sbjct: 462 HSSSPDSLCQSPRVAEQTA-VEVQDTPATSHDSVVSPAPSPLPQLEQTP 509
>SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9)
Length = 97
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 376 IMRAIAIAGRLESRGVRYFYSEV---LFDLSSCKLCLICTE*I*SLMNDCGTC 525
+M+A A++ E+ G+R FY V F ++ +LCL+C LM C C
Sbjct: 1 MMKAQAVSREKEAAGLRRFYDAVETRKFTINCQRLCLVC------LMTICDLC 47
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -1
Query: 541 LFSSQSTYHSRSSNFKFTLYKSGIAYRNSDQT-KLPSKNI*RHGSPADQQSQLPS*CAST 365
L ++ + +++ TL++ +Y++ + + PS P D+ S+ P ++
Sbjct: 853 LMNASANAPRKTAQDPMTLWRPQSSYKDDKRKYRTPSPGCFIDSPPQDKTSKRPP--SAQ 910
Query: 364 AWIARVHHPLTTHDGLYRPRPPPEPNAHRAPTDYLS 257
++ V T L +PRPPP+P A A T + S
Sbjct: 911 RQLSAVDEYTTF---LVQPRPPPKPRAESAKTRHHS 943
>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -1
Query: 541 LFSSQSTYHSRSSNFKFTLYKSGIAYRNSDQT-KLPSKNI*RHGSPADQQSQLPS*CAST 365
L ++ + +++ TL++ +Y++ + + PS P D+ S+ P ++
Sbjct: 48 LMNASANAPRKTAQDPMTLWRPQSSYKDDKRKYRTPSPGCFIDSPPQDKTSKRPP--SAQ 105
Query: 364 AWIARVHHPLTTHDGLYRPRPPPEPNAHRAPTDYLS 257
++ V T L +PRPPP+P A A T + S
Sbjct: 106 RQLSAVDEYTTF---LVQPRPPPKPRAESAKTRHHS 138
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 210 LLVRSNTIRPIDYPYSSFHHNLSLLFIIIIYINLDWYVSC 91
LL+ +I P+ YP S F S +I++I INL ++C
Sbjct: 1192 LLLYGWSITPLMYPASHFFSVSSTAYIVLISINLFVGINC 1231
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 412 SRGVRYFYSEVLFDLSSCKLCLICTE*I*SLMNDCGTCSGC 534
SRG RY E S +CL+C + TC GC
Sbjct: 717 SRGPRYLSLEAPMTTQSIPICLVCNDRASGRHYGVMTCEGC 757
>SB_16511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 572 PNQTIGYTKF-TIQQPEHVPQSFIKLQIYSVQIRHSLQELRSNKTS 438
P+ TI + +I H P F + Q+YS+ ++Q LRS S
Sbjct: 206 PSVTINMALYVSIPSLTHSPLGFAQAQVYSIPFGMTIQNLRSGSPS 251
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = -1
Query: 439 PSKNI*RHGSPADQQSQLPS*CASTAWIARVHHPLTTHDGLYRPRPPPEPNAHRAPT 269
PSK G P + Q+ L C T HHP T LY P HR T
Sbjct: 99 PSKTQANCGHPTETQAYL---CHPTKIQVNWHHPSKTQANLYHPTKTQANWYHRTKT 152
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = -3
Query: 356 RPCASPADYTRWSLQTPTSARAKRAPRTHGLLELPQETPISTGLRL 219
R C+ PAD W + + R H LE P P +L
Sbjct: 400 RQCSGPADSPEWEIPDMSQCVTDAIARIHKELEGPDVKPFQVATKL 445
>SB_37996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 612 KVIKALNCFNTILTKSNNRVYKVHYSAARARTTVVHQTSN 493
K K CF T T S+ + + A R TT +TSN
Sbjct: 17 KTSKRRKCFRTFQTNSDKKTSNLRKCAERKLTTEYRKTSN 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,808
Number of Sequences: 59808
Number of extensions: 438106
Number of successful extensions: 1310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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