Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30131
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    30   1.7  
U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   6.7  
U50312-6|AAL65771.1|  106|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical
           protein C54C8.6 protein.
          Length = 179

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 607 HQSFKLF*YHFNQIKQ*GIQSSLFSSQSTYHS-RSSNFKFTLYKSGIAYRN 458
           +Q  K     F+ I Q GI    F+SQS +HS  ++N  F+ YK   A+ N
Sbjct: 80  YQGLKSAQIKFSHITQHGISVQFFTSQSNWHSITNNNRSFSSYKLWWAHTN 130


>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 343 HPLTTHDGLYRPRPPPEPNAHRAPTDYLSCLKRHRFLPGYD 221
           H    H GL  P  P  PN H+AP      +K HR L G +
Sbjct: 272 HASNEH-GLNSPNGPNNPNDHQAPDANAIDVKMHRSLDGVE 311


>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical
           protein K07E3.7a protein.
          Length = 1174

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 307 RPPPEPNAHRAPTDYLSCLKRHRF---LPGYDYVIATGTVEHNTADRLSLLEFSPQFKLA 137
           RPPPE   +    +  S +K+H F   L     +I+T + EH+  D +   + SP+   +
Sbjct: 579 RPPPEQATYHPENNEYSVIKQHPFNSALQRMSVIISTPS-EHSAHDMMVFTKGSPEMIAS 637

Query: 136 L 134
           L
Sbjct: 638 L 638


>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical
           protein K07E3.7b protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 307 RPPPEPNAHRAPTDYLSCLKRHRF---LPGYDYVIATGTVEHNTADRLSLLEFSPQFKLA 137
           RPPPE   +    +  S +K+H F   L     +I+T + EH+  D +   + SP+   +
Sbjct: 608 RPPPEQATYHPENNEYSVIKQHPFNSALQRMSVIISTPS-EHSAHDMMVFTKGSPEMIAS 666

Query: 136 L 134
           L
Sbjct: 667 L 667


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 358 IARVHHPLTTHDGLYRPRPPPEPNAHRAP 272
           +A   + L   D  +R +PPP P+  RAP
Sbjct: 2   MAEFQNKLDDGDNRFRKQPPPPPSPRRAP 30


>U50312-6|AAL65771.1|  106|Caenorhabditis elegans Hypothetical
           protein B0222.10 protein.
          Length = 106

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 210 LLVRSNTIRPIDYPYSSFHHNLSLLFIIIIYINLDWYVSCWHF 82
           LL  ++ IR  D   + F++ ++ L +I +YI L +YV+ + F
Sbjct: 40  LLHAASVIRIFDIHINLFNNFVTFLLVIFLYIFLIYYVTFFVF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,526
Number of Sequences: 27780
Number of extensions: 320724
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)