Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30131
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48160.1 68415.m06031 PWWP domain-containing protein                30   1.2  
At1g10385.1 68414.m01170 hypothetical protein                          29   2.7  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    29   3.6  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    29   3.6  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    29   3.6  
At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp...    28   6.3  
At1g05310.1 68414.m00538 pectinesterase family protein contains ...    23   9.4  

>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 346  HHPLTTHDGLYRPRPPPEPNAHRAPTDYLSCLKRHRFLPGYDY 218
            H P  +H   + P PPP P    +  +    LK HR  P Y +
Sbjct: 1225 HRPYPSHPHPHPPPPPPPPQHQFSFREPGHVLKSHRDAPSYSH 1267


>At1g10385.1 68414.m01170 hypothetical protein
          Length = 754

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 404 RPAIAIALMMRIHRVDRPCASPADYTRWSLQ-TPTSARAKRAPRTHGLLEL 255
           RP +  AL   + R+++  A+ A    WSL  TPT +RA     T   L+L
Sbjct: 369 RPGVEQALTGNLKRIEQSSAALAASDDWSLSYTPTGSRASSTTPTAPHLKL 419


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
            protein contains similarity to ec31p [Oryza sativa]
            gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
            WD domain, G-beta repeat
          Length = 1102

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 412  SPADQQSQLPS*CASTAWIARVHHPLTTHDGLYRP---RPPPEPNAHRAPTDYLSCLKRH 242
            +P D Q Q P     + ++ +V HP      ++ P   +P P+P+   APT       R 
Sbjct: 816  NPYDNQYQQPY--TDSYYVPQVSHPPMQQPTMFMPHQAQPAPQPSFTPAPTSNAQPSMRT 873

Query: 241  RFLP 230
             F+P
Sbjct: 874  TFVP 877


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
            protein contains similarity to ec31p [Oryza sativa]
            gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
            WD domain, G-beta repeat
          Length = 1104

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 412  SPADQQSQLPS*CASTAWIARVHHPLTTHDGLYRP---RPPPEPNAHRAPTDYLSCLKRH 242
            +P D Q Q P     + ++ +V HP      ++ P   +P P+P+   APT       R 
Sbjct: 818  NPYDNQYQQPY--TDSYYVPQVSHPPMQQPTMFMPHQAQPAPQPSFTPAPTSNAQPSMRT 875

Query: 241  RFLP 230
             F+P
Sbjct: 876  TFVP 879


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 501 FDERLWYVLWLLNSELCIPYCLI 569
           FDE   +V W+ N E  +P CL+
Sbjct: 338 FDEEFEHVSWIYNDESSVPKCLL 360


>At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam profile: PF01805
           surp module
          Length = 442

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 358 IARVHHPLTTHDGLYRPRPPP 296
           +AR+HHPL  HD     R PP
Sbjct: 248 MARMHHPLNKHDSQGTLRVPP 268


>At1g05310.1 68414.m00538 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 393

 Score = 23.0 bits (47), Expect(2) = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 217 VIATGTVEHNTADRLSLLEFSPQFKLAL--HHHHLH 116
           V+A+ T+     +   +   S  FK +L  HHHH H
Sbjct: 17  VLASKTLFKTHPEAFGIKAISYSFKKSLCDHHHHHH 52



 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 133 HHHHLHQP 110
           HHHH H+P
Sbjct: 56  HHHHRHKP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,750
Number of Sequences: 28952
Number of extensions: 294511
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)