Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30130
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   281   9e-77
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   280   1e-76
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  281 bits (688), Expect = 9e-77
 Identities = 139/226 (61%), Positives = 167/226 (73%), Gaps = 1/226 (0%)
 Frame = +3

Query: 9   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 188
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 189 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 368
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 369 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 545
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 546 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESQ 683
           IQRLVTP  LQ                    AE+A+L+A+R  E++
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAK 223


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  280 bits (687), Expect = 1e-76
 Identities = 138/226 (61%), Positives = 167/226 (73%), Gaps = 1/226 (0%)
 Frame = +3

Query: 9   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 188
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 189 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 368
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 369 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 545
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 546 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESQ 683
           IQRLVTP  LQ                    AE+A+L+A+R  E++
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAK 223


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = -3

Query: 575 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 408
           +N   D P  L C+ +      S+ FS  G   A       +I + K E +   GSTFG 
Sbjct: 57  ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115

Query: 407 *TAGYISISQSRNFLGTLAHNNKSQD 330
             +G       R++   L H+N  QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,632
Number of Sequences: 5004
Number of extensions: 56239
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)