Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30128
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)     113   2e-25
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        33   0.30 
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          31   1.2  
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    30   1.6  
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)                  30   2.1  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   4.9  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   6.5  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 28   6.5  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   8.6  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score =  113 bits (271), Expect = 2e-25
 Identities = 69/181 (38%), Positives = 102/181 (56%)
 Frame = +1

Query: 139 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 318
           MG  MA NL+ +G+ V  +D   ++++   + G   A +              + +NK+V
Sbjct: 1   MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAET---------PDEVAMKTNKIV 51

Query: 319 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 498
               L    V    + G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  
Sbjct: 52  --TMLPSSSV----QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105

Query: 499 TLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNM 678
           TL FM GG++E FE++  +L  MG    H G  G+GQ AK+ NNML+ ++ + TAE MN+
Sbjct: 106 TLTFMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNL 165

Query: 679 G 681
           G
Sbjct: 166 G 166


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 35/128 (27%), Positives = 61/128 (47%)
 Frame = +1

Query: 94  SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 273
           +S + + V  +G GN+G  +A  L K   +V+ +D  ++  N     G T  NS      
Sbjct: 3   TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62

Query: 274 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 453
                 + L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+  
Sbjct: 63  DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121

Query: 454 TDAPVSGG 477
            +AP++GG
Sbjct: 122 VEAPLTGG 129


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +1

Query: 361 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 540
           + G ++ID    +     +      E+GL F  + VSGG  GA+    + M GG ++ + 
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197

Query: 541 RSLPLLKVMGAKQFH--C----GQIGSGQVAKLTNN 630
              P+ + + AK  +  C    G  GSG   K+ +N
Sbjct: 198 HIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVHN 233


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 109 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 234
           K +A +GLG +G  +A  +   G    GYDP     +AA  N
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50


>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +2

Query: 116 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 214
           W+    + W D W+  W+  +    A + P +H
Sbjct: 28  WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 382 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 558
           ++ +  P    Q F I  L      +  P+SGGV G  +AT +  + G+K   + ++  L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322

Query: 559 KVMGAK 576
           +++  K
Sbjct: 323 QMVKKK 328


>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
          Length = 577

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
 Frame = -3

Query: 696 SPILMPHVHALSCSHSGDAHQHIVGQLSHLS*ADLSAVELLSSHHFEERKGPFEVFFTTS 517
           SP+ +PHV     S   D     + Q   ++  D+  +E+    HF  R     V F   
Sbjct: 116 SPMRLPHVTPPCDSPIYDDEAEQITQYERIAIEDVEKIEIGFEPHFNTRYLFIRVHFKIQ 175

Query: 516 GHEGQGSVLSTHDSSRYRCICESQPFL*GYREDLFG------NIRIYRTRIDQKRS 367
           G  G    L T    ++R   E++  L G   D F        ++I  T++D+KRS
Sbjct: 176 GVSGHFHTLRT---IQHRTPEEAKAVLLGI-ADAFSTARGALGLKITETKLDRKRS 227


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 429 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 283
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298


>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 32  KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 142
           KW   Q    S+C + P+ +I  +  R +LS++S+ W
Sbjct: 3   KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 429 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 283
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 429 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 283
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 470 LEESWVLRTLPW---PSWPEVVKKTSKGPFLSSK*WELSSS 583
           LEES+ ++       PSWP     TS  P+L++K  +LS S
Sbjct: 166 LEESYTIQMTKCFTNPSWPVFEDSTSTSPYLTTKVSKLSHS 206


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 451 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS-GQVAKLTN 627
           F D P + GV+  +N  ++F+   +K D   +   L+ +G+K+  C  +    ++ K   
Sbjct: 70  FNDTPNTFGVLSKENGKISFV-DSQKYDHAINYAGLRDLGSKEIQCNLVRELLRIVKPGG 128

Query: 628 NMLMGITGMATAECMNM 678
           ++ +G   M   EC  M
Sbjct: 129 SIYLG-HNMEETECKVM 144


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 94  SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 240
           S    ++   L +G+  G  A  LVK GFT +   DPS+ +   A K  +
Sbjct: 61  SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,948,151
Number of Sequences: 59808
Number of extensions: 577223
Number of successful extensions: 1730
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)