Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30127
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572...    29   4.9  
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967...    29   4.9  
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    29   4.9  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    28   6.5  
11_06_0156 + 20748472-20748951                                         28   8.6  
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985...    28   8.6  

>11_01_0694 -
           5719188-5720400,5720439-5721194,5722004-5722247,
           5723862-5723901
          Length = 750

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +1

Query: 244 IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVA 423
           ++ G G +  N  + +   L +FLE+    + KST E R+  +++  +  S+N +    A
Sbjct: 253 VHTGEGQSSSNLPLLEHAILDEFLELSRLENVKSTQEARSIKLIEKESINSLNLEWTGGA 312

Query: 424 QKNLFDKLNILG 459
            + + D +N+LG
Sbjct: 313 DRFVED-MNVLG 323


>10_06_0018 -
           9674771-9674995,9675079-9675126,9675471-9675530,
           9675693-9675758,9675844-9675906,9675985-9676032,
           9676150-9676215,9676493-9676558,9676660-9676725,
           9676822-9676887,9676975-9677058,9677310-9677654,
           9677738-9677833,9678129-9678332,9678434-9678726,
           9678833-9678958,9679217-9679226
          Length = 643

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 178 NVDIDIDQDSNEFLNVDILVEKIYNG 255
           N D+DID +SNE  +VDI V ++ NG
Sbjct: 25  NDDVDIDDESNEDTDVDINV-RVENG 49


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 178 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGIS-AKSTIE 354
           N D+DID + NE  +VDI V ++ NG   T   T ++    L K L + +  +     + 
Sbjct: 67  NDDVDIDDEGNEDTDVDINV-RVENGAPETRGKTKLKDVWNLPKGLRIVVQCNDLNQAVG 125

Query: 355 ERNQAILDFVTKISVN 402
           E +  +  F+  IS N
Sbjct: 126 EEDGILGKFLGMISRN 141


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 178 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEV 321
           N D+DID + NE  +VDI V ++ NG   T   T ++    L K L +
Sbjct: 67  NDDVDIDDEGNEDTDVDINV-RVENGAPETRGKTKLKDVWNLPKGLRI 113


>11_06_0156 + 20748472-20748951
          Length = 159

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 3   GRKRLRIKKY*KFIQAGKNMGEGRQEVKKIRGQGKKE 113
           GR+RLR+++      AG  + E     ++I G+GK+E
Sbjct: 77  GRQRLRLRELEGKAAAGHRLHETMSRRRRISGRGKRE 113


>02_04_0488 +
           23397480-23397687,23397777-23397805,23398462-23398564,
           23398811-23398982,23399380-23399440,23399757-23399889,
           23400438-23400709,23400776-23400843,23401096-23401235,
           23401413-23401499,23401580-23402088,23402173-23402990,
           23403024-23403222,23403662-23403817
          Length = 984

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 175 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 327
           VN   + ++   E +N+D   +     Y L+D ++D++KK    K L   L
Sbjct: 536 VNGHFEEEECDEEIMNIDASSDSSLEPYDLSDDDSDLQKKFTQLKDLAAAL 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,066
Number of Sequences: 37544
Number of extensions: 225956
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)