Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30127
         (723 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-P...    29   6.4  
AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p pro...    29   8.5  
AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA p...    29   8.5  

>AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-PA
           protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 2   RKKKTQNQKVLKIYTSRKKYGRRKTRSQKN*RPRKKR 112
           R K++Q +K  +I   RK+  RR+ R+++  R R+K+
Sbjct: 220 RAKESQKRKRKRIRRRRKRIRRRRKRTRRRRRKRRKK 256


>AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 29  VLKIYTSRKKYGRRKTR 79
           +LKIY  +K+YGRRK R
Sbjct: 309 ILKIYLKQKQYGRRKKR 325


>AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 29  VLKIYTSRKKYGRRKTR 79
           +LKIY  +K+YGRRK R
Sbjct: 309 ILKIYLKQKQYGRRKKR 325


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,945,906
Number of Sequences: 53049
Number of extensions: 424224
Number of successful extensions: 1379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)