Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30126
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0109 + 1338525-1338590,1338744-1339325                           28   6.2  
04_03_0453 - 16058125-16058407,16059104-16059507                       28   8.3  

>10_01_0109 + 1338525-1338590,1338744-1339325
          Length = 215

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 257 EGRRKNHRRHC--KKSCCNYWGGDD*EVSAINCRRNDKNCGKESVRKSREKSCRNCSNTN 84
           EGR ++ + HC  +K  CN           ++C +  KN  + +  +SR++  R+ S  +
Sbjct: 142 EGRCEDEQTHCSKRKKPCN-----------VSCSKLSKNPSRVAGYRSRKEEPRHSSKKS 190

Query: 83  TNASGVCSRRSK 48
             +S  CS+++K
Sbjct: 191 KPSSVPCSKQAK 202


>04_03_0453 - 16058125-16058407,16059104-16059507
          Length = 228

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 321 AILKLTEPTEAIGFLPEAMSLPIFALDSKIPTGSFLAAETKPSV-IMPP 464
           A+L+L     A+  LPE  + P   ++   P    LAA   PS+ + PP
Sbjct: 3   ALLQLAMSVAAVPHLPEEETTPSVDVEIASPDQQHLAAAAAPSMAVFPP 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,589
Number of Sequences: 37544
Number of extensions: 288421
Number of successful extensions: 819
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)