Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30126
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        29   2.8  
SB_12919| Best HMM Match : Fibrinogen_C (HMM E-Value=0.042)            28   8.4  
SB_52508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 383 TYICT*LKNTYRLVLSRRNQAVCNHASVYASQCSSCRSC 499
           TY C+ ++  YR   SR + ++CN+   Y + CSS R C
Sbjct: 388 TY-CSSIRRCYRR--SRSHLSMCNNGFYYRTYCSSFRRC 423


>SB_12919| Best HMM Match : Fibrinogen_C (HMM E-Value=0.042)
          Length = 438

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -3

Query: 317 GRYRWLWHGRSF*RCQ*SPGEGRRKNHRRHCKKSCCNYWGGDD*EVSAIN-CRRNDKNCG 141
           G+YR + HGR F +    P      + + HC     N + G +   + I     N+ +CG
Sbjct: 251 GKYRTMSHGRKFWKAM-VP----VSSLQNHCNSEGFNVFSGGNGGKARIGIISNNELDCG 305

Query: 140 KESVRKSREKSCRNCSNTNTNASG 69
               R        +C   N N++G
Sbjct: 306 SPDSRLGLGTMGSSCGMNNDNSAG 329


>SB_52508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 638 TGFDSGCRPRKRNCSLCRWRYRRRQQFY 555
           T F+ GC+ RKR  ++ +W++  R+Q +
Sbjct: 5   TNFNKGCQ-RKRQKAIAKWQFYDRKQIF 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,181
Number of Sequences: 59808
Number of extensions: 358952
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)