Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30126
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    31   0.98 
At2g05600.1 68415.m00596 hypothetical protein                          30   1.3  
At1g17920.1 68414.m02218 homeobox-leucine zipper family protein ...    27   9.1  

>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 263 PGEGRRKNHRR-HCKKSCCNYWGGDD*EVSAINCRRND---KNCGKESVRKSREKSCRNC 96
           PGEG    H + H  K C      +  ++  + CRR     KNC +++   S +K C NC
Sbjct: 72  PGEGCFICHSKTHIAKLCPEKSEWERNKI-CLQCRRRGHSLKNCPEKNNESSEKKLCYNC 130

Query: 95  SNTNTNAS 72
            +T  + S
Sbjct: 131 GDTGHSLS 138


>At2g05600.1 68415.m00596 hypothetical protein
          Length = 239

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 CDGLRRDFTGNARNSSHAKATYTVHGDFETYGTHRSHWI 361
           CDGL   +  N  +S ++K +Y + GD   +     HW+
Sbjct: 33  CDGLVCIYVHNTPSSENSKISYRLSGDRTIFANGSLHWL 71


>At1g17920.1 68414.m02218 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           A20 (GI:1881536) [Arabidopsis thaliana]; similar to
           homeobox protein GI:1173622 from [Phalaenopsis sp.
           SM9108]
          Length = 687

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 548 LIHRIVASFCISNGIMNNS 604
           L HR+V++FC+S G  NN+
Sbjct: 467 LAHRMVSNFCLSVGTSNNT 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,025
Number of Sequences: 28952
Number of extensions: 230252
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)