Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30124
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09) 100 2e-21
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05) 32 0.42
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 30 1.7
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0) 30 1.7
SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4) 30 2.3
SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51) 29 5.2
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 6.9
SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06) 28 6.9
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10) 28 6.9
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 28 6.9
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 28 6.9
>SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)
Length = 229
Score = 99.5 bits (237), Expect = 2e-21
Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 6/212 (2%)
Frame = +3
Query: 81 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 260
L+ G G TCN RE CV E Y++LNEYA KLY +
Sbjct: 28 LKAGMCGILVTCNERENACVSEAYSILNEYADKLYGPV----------------GHSGKE 71
Query: 261 XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLP---SPEELTT 431
+ + L RE K+ + RF+ F +GA N +F++TNLP P +L
Sbjct: 72 DAEEGEDVEEALARE----KQGMNQDKRFQSFM---SGAKNVVFIRTNLPDNAKPLDLVR 124
Query: 432 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKE---PTSFSVVF 602
+I +DL K+R +R LP+ TC A DI ++A LF+ YFL E P F++ F
Sbjct: 125 SIFEDLQKNGKMKSRLCLRFLPVDATCHAKEEDIKKTALSLFEDYFLVENIKPCKFAITF 184
Query: 603 NKRFNNSVSRDLIIKELAELVVVKNRENKADL 698
R N+++ RD +IK LA L+ + + DL
Sbjct: 185 KARNNSNMQRDDVIKLLAGLIGEAGKGHTVDL 216
>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
Length = 1084
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 529 SGRFALQVIIIGSSRITCLVF*IRVAIRSFIMAVVSSSGLGKLVLTKIQFDA 374
SGR L VII GS R+ LV I + R ++ ++S S G+LVL +I D+
Sbjct: 784 SGRLVLLVIISGSGRLVLLVI-ISDSGRLVLLVIISDS--GRLVLLEIISDS 832
>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
Length = 1306
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 34 GKRRNFTLGNEETNISWNPASRASFARVTLE 126
GK RNFTL N N++W + ++TLE
Sbjct: 580 GKDRNFTLDNVCYNVTWEQTKFSESTKMTLE 610
>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
Length = 1821
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 34 GKRRNFTLGNEETNISWNPASRASFARVTLE 126
GK RNFTL N N++W + ++TLE
Sbjct: 1022 GKDRNFTLDNVCYNVTWEQTKFSESTKMTLE 1052
>SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4)
Length = 698
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 529 SGRFALQVIIIGSSRITCLVF*IRVAIRSFIMAVVSSSGLGKLV 398
SGR L VII GS R+ LV I + R ++ ++S SG L+
Sbjct: 498 SGRLVLLVIISGSGRLVLLVI-ISDSGRLVLLVIISDSGRLSLI 540
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -3
Query: 529 SGRFALQVIIIGSSRITCLVF*IRVAIRSFIMAVVSSSGLGKLVLTKIQFDA 374
SGR L VII S R+ LV I + R ++ ++S S G+LVL I D+
Sbjct: 607 SGRLVLLVIISDSGRLVLLVI-ISDSGRLVLLVIISDS--GRLVLLVIISDS 655
>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
Length = 407
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 227 RYCRRWNLLHI*IWVEFTGIFVQKIIYFFDAVFFSKVTRAKEALEAGF 84
RY RW ++H WV F G+ + + FDA+ FS ++R AG+
Sbjct: 277 RYLMRWFIVH---WVVF-GVNCLAV-FAFDAMHFSLLSRVFRGAPAGY 319
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 405 LPSPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDI-MESAGKLFDKY 566
LPSP EL+ A+ K+L ++ + R+L I + +L + E A K+ + Y
Sbjct: 520 LPSPRELSAALAKELQEFYVRHENKLKRVLEEKIIVEDDLESLRQEHAKKIEEAY 574
>SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 748
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 438 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQTFIDTIHEHSLSQGVTE 491
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 119 VTRAKEALEAGFQEIFVSSFPKVKFLLFPRVT 24
+T + ++ GF+E+F+S P +++ PR +
Sbjct: 69 ITLPRASVLVGFREVFLSKVPSKRYITLPRAS 100
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 411 SPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKL-FDKYFLKEPTS 587
+P E +KD TR+Q+ R M+ ++ S G L F ++ KEP
Sbjct: 180 APTEDADEHLKDEFYTRLQEVLD-SRNQHDMLIITGDMNAKNHSQGNLDFTRWKDKEPDR 238
Query: 588 FSVVFNKRFNNSV 626
V+ NKRF NSV
Sbjct: 239 PYVLVNKRFRNSV 251
>SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06)
Length = 493
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 289 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 342
>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 907
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 209 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 262
>SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)
Length = 805
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 209 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 262
>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 589 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 642
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 354 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 407
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 498 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 659
+++T NLPDI +KY +K + V+ N+ F +++ + + + E
Sbjct: 351 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTE 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,815
Number of Sequences: 59808
Number of extensions: 367271
Number of successful extensions: 791
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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