Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30124
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    55   5e-08
AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.6  
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF024493-4|AAB70321.2|  249|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 6/201 (2%)
 Frame = +3

Query: 81  LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 260
           +E G  G F +C   EK  ++E Y++++E      P   +    P A P           
Sbjct: 97  VEAGVTGLFFSCEGHEKQALQEAYSIIDELLED--PANGISLKAPEAAPQGSEAPGNPAE 154

Query: 261 XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVE--TGASNCIFVKTNLPSPEELTTA 434
                  I D L++  D  ++    +   K  + ++  TG  NCIFV     + + L   
Sbjct: 155 AEDSDEDIADALKKACDDQRQPKPGNFVKKERRCIQRPTGVKNCIFVSVKNANIQLLAEK 214

Query: 435 IIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT----SFSVVF 602
           +++  +  +  + R + R+ P+  T   +L  + E   K+       + T    ++SV F
Sbjct: 215 MVE--LTQKAPRCRFLQRVYPVEHTLAVDLSKMNEVLMKVISDTLKADGTGKLPTYSVEF 272

Query: 603 NKRFNNSVSRDLIIKELAELV 665
             R N+SV+++ +++ + + V
Sbjct: 273 KARNNDSVAKNSVLQMVDDAV 293


>AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical
           protein K02F6.6 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 318 KKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKD 446
           +K ++K  + +R  V++T ASNCIF+  + P   +L    ++D
Sbjct: 16  RKQTEKCKKSRRTDVLQTDASNCIFIDRS-PKHFDLILNFLRD 57


>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = -2

Query: 674 FYNY*FRKLFDDQVSGYTVI-----ESFV--ENYRKASRFF*EILIKKFSSAFHYVRKV 519
           F+NY  ++ +DD  S   +I     E F+  +++RK    F +I+IK  S   H +RK+
Sbjct: 195 FFNYTAKRAYDDMSSNRYIISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKM 253


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 87   PGFKGFFCTCNFREKDCVKEVYNLLNEY 170
            PGFKG  C+ N  E  C+ +    L+EY
Sbjct: 2022 PGFKGLLCSSNACENFCLHDGNCTLDEY 2049


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 420 ELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDI--MESAGKLFDKYFLKE 578
           EL    + +++   +  T H  R +   + CK  LP++  +E +G L D+  L+E
Sbjct: 204 ELFALKLLNVLDLSMHSTHHARRNMQRFLDCKQVLPELRFLECSGNLMDEDMLEE 258


>AF024493-4|AAB70321.2|  249|Caenorhabditis elegans Hypothetical
           protein F23F1.2 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 600 FNKRFNNSVSRDLIIKELAELVVVKNREN 686
           F++ FN ++SR+ + + LAE  +VK REN
Sbjct: 114 FDEDFNMALSREELERVLAERFLVKPREN 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,190
Number of Sequences: 27780
Number of extensions: 297762
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)