Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30124
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.99 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.99 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.0  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 150 YNLLNEYASKLYPDLD-VEQVP-PSAVP 227
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNNNNYNKKLYYNINYIEQIPVPVPVP 123


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 150 YNLLNEYASKLYPDLD-VEQVP-PSAVP 227
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVP 361


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 150 YNLLNEYASKLYPDLD-VEQVP-PSAVP 227
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNDNNYNKKLYYNINYIEQIPVPVPVP 123


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 416 RGTDHRHYKRPNRYTNSENQTCDATASNNDY 508
           R TD RHY R     ++EN   +   ++ D+
Sbjct: 169 RATDSRHYDRYKEEESNENYNWEHKETHIDW 199


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 19  TWVTRGKRRNFTLGNEETNISWNPASRASFARVTLEKKTAS 141
           +WV     RN+TL NE +      A+  SF   ++E+ + S
Sbjct: 274 SWVNTSVIRNYTLFNENSE-----AAARSFVPFSIERSSQS 309


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 449 NRYTNSENQTCDATASNNDYL*SKPSGHNGKRWKTF 556
           N  +NS++Q    ++ + +   S+ SG+ G+R  TF
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 449 NRYTNSENQTCDATASNNDYL*SKPSGHNGKRWKTF 556
           N  +NS++Q    ++ + +   S+ SG+ G+R  TF
Sbjct: 19  NTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,362
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)