Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30124
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12410.1 68418.m01459 THUMP domain-containing protein contain...    57   1e-08
At1g09290.1 68414.m09506 expressed protein This gene is continue...    38   0.009
At4g12850.1 68417.m02013 far-red impaired responsive family prot...    29   4.3  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    28   5.7  
At1g50960.1 68414.m05729 gibberellin 20-oxidase-related similar ...    27   9.9  

>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
           Pfam profile PF02926: THUMP domain
          Length = 376

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
 Frame = +3

Query: 315 IKKNSQKSLRFKRFQVVETGASNCIFVKTNL----PSPEELTTAIIKDLIATRIQKTRHV 482
           +K+   KS R  RF  ++ G +  +F++       PSP+E+    +    AT+   +R +
Sbjct: 208 LKELGDKSKR--RFMKLDPGCNGLVFIQMKKRDGDPSPKEIVQHAMTSAAATKKHMSRFI 265

Query: 483 MRLLPIMITCKANLPDIMESAGKLFDKYF---LKEPTSFSVVFNKRFNNSVSRDLIIKEL 653
           +RLLPI ++C  +  +I  +   L ++YF    + P  F+V++  R N  + R  II  +
Sbjct: 266 LRLLPIEVSCYPSEEEISRAIKPLVEQYFPIETENPRKFAVLYGARANTGLDRMKIINTI 325

Query: 654 AELV 665
           A+ +
Sbjct: 326 AKSI 329



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 81  LEPGFKGFFCTCN-FREKDCVKEVYNLLNEYASKLYPDLDVEQVP 212
           L+PG +GFF +C+  RE    +E  N+++ +  +L    D +  P
Sbjct: 29  LKPGVQGFFISCDGGREFQAAQEAINVIDSFFEELIQGTDSKVNP 73


>At1g09290.1 68414.m09506 expressed protein This gene is continued
           on the 5' end of BAC T12M14
          Length = 348

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 37/209 (17%), Positives = 81/209 (38%), Gaps = 13/209 (6%)
 Frame = +3

Query: 81  LEPGFKGFFCTCNF-REKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXX 257
           L     GF  TCN  REK   KEV ++L +Y   ++ +        ++            
Sbjct: 56  LHHSHSGFLVTCNIKREKSATKEVMSILGKYIGSMHEEKPEVLNSTASKKQKVCAQETEE 115

Query: 258 XXXXXXXXIGDILRR-----EVDSIK-KNSQKSLRFKRFQVVETGASNCIFVKTNLPSPE 419
                     D L+       V+ +K  N + +      ++ ++G     F   N P+  
Sbjct: 116 GGEKTVPLENDALQETGENPNVEDLKLANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTT 175

Query: 420 ELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYF------LKEP 581
            + + + + + +  ++      R+ P+  TC     ++ E+  KL  ++       L +P
Sbjct: 176 NIVSRVFQSMESGALKAPIWCHRIFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKP 235

Query: 582 TSFSVVFNKRFNNSVSRDLIIKELAELVV 668
             F+  + +R     ++  I K+ ++++V
Sbjct: 236 VKFAAGYQRR-GAEETKGKIRKDASDVLV 263


>At4g12850.1 68417.m02013 far-red impaired responsive family protein
           / FAR1 family protein weak similarity to far-red
           impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF03101: FAR1 family
          Length = 183

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 510 CKANLPDIMESAGKLFDKYFLKEPT-SFSVVFNKRFNNSVSRDLIIKELAELVVVKNR 680
           CKA +   ME +GK     F+KE   S   + +  +++   ++  IKEL E +  ++R
Sbjct: 81  CKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFADKERKIKELTEEIECQDR 138


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 324 NSQKSLRFKRFQVVE-TGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLLPI 500
           NS K  R   F  V+  G++N  F+  ++  P+EL   I+K L A  +++   V +    
Sbjct: 8   NSPKRRRCSSFAAVDLVGSANRTFM-VSVSLPKELILEILKRLPAKSVKRFHCVSKQWAS 66

Query: 501 MITC 512
           M++C
Sbjct: 67  MLSC 70


>At1g50960.1 68414.m05729 gibberellin 20-oxidase-related similar to
           gibberellin 20-oxidase from Pisum sativum [GI:1848146],
           Phaseolus vulgaris [GI:2262201]; contains Pfam domain
           PF03171, 2OG-Fe(II) oxygenase superfamily
          Length = 336

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 653 KLFDDQVSGYTVIESFVENYRKASRFF*EILIKKFSSAFHYVRKVCFTSNHYWK-QSHHM 477
           ++ DD+ +  T++E++V+   + ++   EIL K+ + +  Y   +    N + +   +H 
Sbjct: 144 RISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHP 203

Query: 476 SGF 468
           S F
Sbjct: 204 SVF 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,723
Number of Sequences: 28952
Number of extensions: 277273
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)