Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30123
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 172 4e-44
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 164 1e-41
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 28 1.2
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.7
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 27 3.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 172 bits (419), Expect = 4e-44
Identities = 85/139 (61%), Positives = 102/139 (73%)
Frame = -2
Query: 436 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 257
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 256 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 77
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 76 VRLARDYDALDVANKIGII 20
V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 164 bits (399), Expect = 1e-41
Identities = 81/139 (58%), Positives = 99/139 (71%)
Frame = -2
Query: 436 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 257
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 256 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 77
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 76 VRLARDYDALDVANKIGII 20
V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Frame = -3
Query: 297 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQTSTI------SRLQSRNSM 136
+ L IA+ T SL + K+ R + T PW +LS+Q I +RL S+N
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKT 392
Query: 135 I*MLL---KSTLSSGLMVRRKRTYDSL 64
+ + +T+SSG+M + R + +
Sbjct: 393 VSNVYDESNATISSGVMQKDLRKTEEI 419
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 164 MVLVCTCVDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQRLS 304
MV++ C+D KD + + C + + EF DV+ + + Q S
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYAS 833
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 47 QCVIISSESYVRFLLTIRPDESVDFSNIY 133
+C+ I E + FL I+P E+V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 44 VQCVIISSESYVRFLLTI--RPDESVDFSNIYIIEFLDCSLDMV 169
V I S +S+ FL+ D+SVD ++ I+ +CS D++
Sbjct: 45 VVTTITSYQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADIL 88
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 5 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDESVDF 121
+W +++ A FV + + +S +RFL ++P + DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = -2
Query: 277 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 125
+ A+++ +F E ++ +DN T I H + ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 11 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 106
++ +NF NV C I +S F IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,617
Number of Sequences: 5004
Number of extensions: 45223
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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