Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30123
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...   182   2e-46
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...   179   2e-45
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    33   0.14 
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...    31   1.0  
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...    30   1.8  
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At1g10530.1 68414.m01186 expressed protein                             28   7.2  
At1g05950.1 68414.m00624 expressed protein                             28   7.2  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score =  182 bits (444), Expect = 2e-46
 Identities = 92/141 (65%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = -2

Query: 439 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 263
           P  KALKA + V  G+  K+  +KIR  V F RPKT   PR PKYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQ 73

Query: 262 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 83
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KK
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKK 133

Query: 82  AYVRLARDYDALDVANKIGII 20
           AYVRL  DYDALDVANKIGII
Sbjct: 134 AYVRLTPDYDALDVANKIGII 154


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score =  179 bits (435), Expect = 2e-45
 Identities = 91/141 (64%), Positives = 104/141 (73%), Gaps = 1/141 (0%)
 Frame = -2

Query: 439 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 263
           P  KALKA + V  G+   K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQ 73

Query: 262 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 83
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTLIRPDG KK
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKK 133

Query: 82  AYVRLARDYDALDVANKIGII 20
           AYVRL  DYDALDVANKIGII
Sbjct: 134 AYVRLTPDYDALDVANKIGII 154


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 181 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 83
           SA+K  IK  ++ LY  +V KVNTL   DGKKK
Sbjct: 38  SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 204 PWSLLSTQVQTSTISRLQSRNSM 136
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 204 PWSLLSTQVQTSTISRLQSRNSM 136
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603


>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 318 TLSTQESLCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQTSTISRLQSRNS 139
           T S Q S+   EI  MPT+S N ++R ++        TP+       +T+T S  +SR +
Sbjct: 240 TSSMQTSMSTPEI--MPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTT 297

Query: 138 M 136
           +
Sbjct: 298 V 298


>At1g10530.1 68414.m01186 expressed protein
          Length = 166

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 418 AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 326
           + +KV + + GK+ R IRNS    + KT+ P
Sbjct: 126 SDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 160 KAAVKKLYDINVAKVNTLI-RPDGKKKAYVRLARDY 56
           KAA+K+ Y+I   KV  L+  P  + KA  RL   Y
Sbjct: 291 KAALKRRYEIKAKKVAALLSHPGARGKATTRLQNRY 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,644
Number of Sequences: 28952
Number of extensions: 240027
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)