Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.47 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    25   0.47 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 145 LTHRHSPPIFSPDLLSESRFRSGGRFCEALFCL 47
           +TH     IFS  LL +   +  G FC   FC+
Sbjct: 229 VTHNEIQTIFSVPLLMKIASQFVGIFCSLYFCI 261


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 145 LTHRHSPPIFSPDLLSESRFRSGGRFCEALFCL 47
           +TH     IFS  LL +   +  G FC   FC+
Sbjct: 54  VTHNEIQTIFSVPLLMKIASQFVGIFCSLYFCI 86


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 637 TGRLIL*ATTTSKRLFYLISRTIFYFYYYQPVVQLSPDF 521
           TG+L   +T  S+       RTI    +YQP+    P +
Sbjct: 172 TGKLRRRSTAASRSRLAAFKRTIALGAFYQPLQPFPPPY 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,257
Number of Sequences: 336
Number of extensions: 3668
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)