Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    29   0.89 
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    28   1.6  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   4.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   6.3  

>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 605 FKTTVLPDFSNDILFLLLPTCCSVVTGFYRYHDIN 501
           F+   +  F+ ++L  LLPTC   VTG   Y++++
Sbjct: 64  FRNAAISPFTEEMLGPLLPTCKLFVTGAAGYNNVD 98


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 352 SKFNFHSPEPLSDFYLHS-QSCGPNDNSRRRPKHVISDPSDP 230
           SK +  SP P S   L + +S  PN+     P  +++ P+DP
Sbjct: 253 SKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDP 294


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 569 ILFLLLPTCCSVVTGFYRYHDIN 501
           +LF   P+C   +  F+R H IN
Sbjct: 620 LLFFTFPSCSQDIVDFFREHTIN 642


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 538 QLSPDFTDITTSTPSATLKREVEA 467
           Q  PD  D+T S PS   +R +EA
Sbjct: 112 QARPDLFDLTVSRPSPLYQRVIEA 135


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 211  CLKAPLVDRKDPK*RVLGDVDCYHSVRTIGNVGRNQIAVPVNEN 342
            C   P +D KDP   +L +         +GN   + IA P + N
Sbjct: 1014 CFLDPAIDDKDPWNEMLHEKKVLLKQLQVGNEDEDNIAFPTSTN 1057


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,177
Number of Sequences: 5004
Number of extensions: 62704
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)