Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869     31   0.93 
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    30   2.1  
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    29   4.9  

>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
          Length = 526

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 175 RFATKGSASKLTHRHSPP 122
           RFA +G++ +LTHRH PP
Sbjct: 55  RFAFRGNSGQLTHRHPPP 72


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 352 SKFNFHSPEPLSDFYLHSQSCGPNDNSRRRPKHV 251
           S   FH+P   +  YLH  S  P+   RRRP  V
Sbjct: 442 SSVPFHTPCLYASIYLHHPSPSPSSCGRRRPHRV 475


>04_04_0927 + 29467121-29467168,29467518-29467604,29468180-29468269,
            29468547-29468741,29469056-29471080,29471208-29471354,
            29471520-29471923,29472015-29472144
          Length = 1041

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 538  QLSPDFTDITTSTPSATLKREVEALI*HNLKKA*LLQAENTQNHGCCLNTSYQYI 374
            QLS +      S P    K E++     NL    L Q  NTQNHG  + T  + +
Sbjct: 876  QLSENSKITPNSIPMQPTKIELQGNTGRNLVTRKLGQLNNTQNHGSSIQTEKECV 930


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,806
Number of Sequences: 37544
Number of extensions: 386480
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)