Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   6.7  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   8.8  

>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 596 TVLPDFSNDI-LFLLLPTCCSVVTGFYRYHDINAV 495
           T  PD   DI L L L T   V TGF RY DIN +
Sbjct: 68  TATPDVRRDICLSLKLKTPSVVCTGFDRYFDINKI 102


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 447 RKHNCSKLKILRIMVVVSIRPTSTYYKHVYKLQSSIFIHRNRYLISTY 304
           R H+   + I+ + ++ S  P STYY H +   + I I+    L+STY
Sbjct: 303 RHHHHQHITIITVNILPS--PPSTYYHHHHHYITGIAINILPLLLSTY 348


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 73   YHRIENATH*ED-PARKSVGCVCGLIYSPSPSSQSVGFNENDDRRFKCLKAP 225
            Y+    ATH +  P  K   C  G   SP+P     G+++N+ R++ C K P
Sbjct: 2209 YYCDGRATHSQQHPCPKGHICPTG---SPAPVPCGPGYHQNETRQWTCKKCP 2257


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 417 LRIMVVVSIRPTSTYYKHVYKLQSSIFIHRNRYLISTYI-PNRADRMITVDVAQNTSFRI 241
           L I +V   R  S    HV++  S+  +H NR L  T +  NR   +  V V ++ S  I
Sbjct: 240 LSITIVHVHRSLSITIVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITI 299

Query: 240 LPIH 229
           + +H
Sbjct: 300 VHVH 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,979
Number of Sequences: 59808
Number of extensions: 450811
Number of successful extensions: 1201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)