Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 447 RKHNCSKLKILRIMVVVSIRPTSTYYKHVYKLQSSIFIHR 328
           RK+   KLKI+   ++ + R  S   +  ++LQ+ I + R
Sbjct: 491 RKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILKR 530


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = +1

Query: 553 NNKNRISFEKSGKTVVLKSSWPKG*DVRCIRIER 654
           ++++R +   + KTV+L +  P+G  +    +++
Sbjct: 86  DSRDRSNTSNTSKTVILSNKGPEGIQINATELQK 119


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +1

Query: 553 NNKNRISFEKSGKTVVLKSSWPKG*DVRCIRIER 654
           ++++R +   + KTV+L    P+G  +    +++
Sbjct: 86  DSRDRSNTSNTSKTVILSDKGPEGIQINATELQK 119


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +1

Query: 553 NNKNRISFEKSGKTVVLKSSWPKG*DVRCIRIER 654
           ++++R +   + KTV+L    P+G  +    +++
Sbjct: 86  DSRDRSNASNTSKTVILSDKGPEGIQINATELQK 119


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/34 (17%), Positives = 20/34 (58%)
 Frame = +1

Query: 553 NNKNRISFEKSGKTVVLKSSWPKG*DVRCIRIER 654
           ++++R +   + KT++L +  P+G  +    +++
Sbjct: 86  DSRDRSNTSNTSKTIILSNKGPEGIQINATELQK 119


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +1

Query: 553 NNKNRISFEKSGKTVVLKSSWPKG*DVRCIRIER 654
           ++++R +   + KTV+L    P+G  +    +++
Sbjct: 86  DSRDRSNASNTSKTVILSDKGPEGIQINATELQK 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,335
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)