Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30122
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55000.1 68416.m06104 tonneau family protein similar to tonne...    29   3.1  
At4g31010.2 68417.m04403 expressed protein                             29   4.1  
At4g31010.1 68417.m04404 expressed protein                             29   4.1  
At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containi...    27   9.5  
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea...    27   9.5  

>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
           1b (GI:11494367) [Arabidopsis thaliana]
          Length = 260

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 45  PRQNSASQNLPPDRKRDSLRRSGEKIGGL 131
           PR++SAS +LPP R+  S  ++ ++  GL
Sbjct: 172 PRRSSASDSLPPQRRPVSASQASDRRAGL 200


>At4g31010.2 68417.m04403 expressed protein
          Length = 341

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 346 FNFHSPEPLSDFYLHSQSCGPNDNSRRRPKHVISDPS 236
           +NF SP PLS     +      +N++++PK     PS
Sbjct: 35  YNFQSPPPLSSSASENPDFNQKNNNKKKPKPQYRPPS 71


>At4g31010.1 68417.m04404 expressed protein
          Length = 405

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 346 FNFHSPEPLSDFYLHSQSCGPNDNSRRRPKHVISDPS 236
           +NF SP PLS     +      +N++++PK     PS
Sbjct: 35  YNFQSPPPLSSSASENPDFNQKNNNKKKPKPQYRPPS 71


>At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 423 KILRIMVVVSIRPTSTYYKHVYK 355
           KIL++M+   + PT+T Y H +K
Sbjct: 376 KILKMMMTRGVDPTTTTYNHFFK 398


>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
           family protein similar to TUPA (GI:11066216) [Emericella
           nidulans]; similar to damage-specific DNA binding
           protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
           PF00400: WD domain, G-beta repeat (3 copies,1
           weak)|19797453|gb|AU229277.1|AU229277
          Length = 783

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 327 NRYLISTYIPNRADRMITVDVAQNTSFRILP 235
           +RYL+++ + N   +++TVD   + +F I+P
Sbjct: 639 DRYLLASAVDNEVRQLLTVDGRLHLNFEIVP 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,007
Number of Sequences: 28952
Number of extensions: 318443
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)