Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30121
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 129 4e-31
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 90 2e-19
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 37 0.002
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 33 0.033
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 33 0.043
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 28 1.2
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.2
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 2.1
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 2.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.8
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 3.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.6
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 8.6
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 129 bits (311), Expect = 4e-31
Identities = 61/111 (54%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +1
Query: 259 PSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKI 438
P+H +N+PALSPTM +G+I +++KK GDK+ GD+LCEIETDKA + FE +EGYLAKI
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKI 110
Query: 439 LIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFK-DDSSPATPQKRASQDKAA 588
LI GTK VPVGK L + V ++ DVAA DF +DSS P ++ ++K+A
Sbjct: 111 LIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSA 161
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 90.2 bits (214), Expect = 2e-19
Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Frame = +1
Query: 229 TVQMRYY--SSLPSHIKV-NLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATM 399
+V+ RY+ S+L + +PALSPTME G+I W KEGD GD+L E+ETDKATM
Sbjct: 20 SVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATM 79
Query: 400 GFETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATPQKRASQD 579
E + G LAK+LI G+ +PVGK + I+ ++++ + KD++S +S++
Sbjct: 80 DVEVQDNGILAKVLIEKGS-NIPVGKNIAIVADAEDNLKDLELPKDEASSEEQSFSSSKE 138
Query: 580 K 582
+
Sbjct: 139 E 139
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 271 KVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPA 450
++ P ++ G++ W K+ G+ +++ + + +ETDK P+ G L + L+
Sbjct: 44 RIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKE 103
Query: 451 G 453
G
Sbjct: 104 G 104
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 33.1 bits (72), Expect = 0.033
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 184 LEYTQNQAVLSVPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSE 357
L +TQ Q +++ P W YY +P H + L T+ S WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 32.7 bits (71), Expect = 0.043
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 307 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAG 453
SG+IV KEG K+ +GD++ + K + P G L + + G
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQG 1170
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 277 NLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 456
N P T G +V + + G+ + G+ E+E K M E+G + I P +
Sbjct: 708 NDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQPGAS 767
Query: 457 KGVPVGKLLCIIVGD 501
+ G +L I+ D
Sbjct: 768 --LDAGDILGILTLD 780
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 82 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEYTQNQAVLSVPQWTVQMRYYSSLP 261
++ L D + IRS ++ LA +V + LE + + V QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 262 SHIKVNLPALS 294
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -3
Query: 268 YVMVDSNNTSSEQSIVVQIELPGSVYILIIYS*LSFLPVL 149
+V SNN + + + V +E P ++++ ++ +SFLP++
Sbjct: 300 FVSFISNNVTKWRCMAVALEFPITLFLWMLAVYVSFLPIM 339
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 343 DKLSEGD--LLCEIETDKATMGFETPEEGYLAKILIPAGTKGV 465
D+L G L + + DK + +ETP EGY +L+ A K V
Sbjct: 798 DQLQPGKVALFVDWQIDKFSFFYETPAEGY--NLLVEANEKSV 838
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +1
Query: 199 NQAVLSVPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEI 378
N + + P W V+ S+L + + + PAL P+ V KK+ +
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQARPVDSWGSTPNT 705
Query: 379 ETDK--ATMGFETPEEGYLAKILIPAG 453
+++ TMG + G +L G
Sbjct: 706 SSNRNSNTMGVSKKKNGKKQTVLFHIG 732
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 109 KKAIRSNITRCISTELAKRKVTNKLLEYT 195
K A+R+NI RC+ T + + N L +Y+
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN-LTDYS 3487
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 392 QLWALRHLKKVTWPKY*FRPVQRECL 469
+LW L + K+VTW Y + R CL
Sbjct: 260 ELWCLLNDKRVTWKAYAGHWIARVCL 285
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 488 LLLEIRMMLRHSKISKMTHHLQHLK 562
L + + +L+HS I K+ H+LQ+ K
Sbjct: 4454 LNVSVSDILQHSSIEKLAHYLQYEK 4478
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 488 LLLEIRMMLRHSKISKMTHHLQHLKNGLVKI 580
L +EI L H + +L+HL+ G+V +
Sbjct: 360 LWMEIWCWLTHRSVDSYRENLKHLRTGMVDV 390
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 448 AGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPA---TPQKRASQDKAACRTGPPLQ 612
AGT PV K+ I ++D +D K+D P TP K + +T LQ
Sbjct: 23 AGTVTKPVTKMSSYIEDAESDAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQ 80
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 91 FDSVTQLFAT-LSIFFTKTIPS 29
F+S T + +T L +FFT+T PS
Sbjct: 820 FESTTLVLSTGLDVFFTRTAPS 841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,124
Number of Sequences: 5004
Number of extensions: 57796
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -