Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30119
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   2.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   5.7  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   9.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   9.9  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 304  FDWVDPFNLDGQLHDDEKAVRDSFRAYCNE--KLLPRVVEANRNEVFHREI 450
            FD+VDPFN+    +  E+A     R Y  +  K L  VV    + + H  I
Sbjct: 923  FDYVDPFNIHYSRNQREEAENILRRRYSKQHSKHLESVVYEEYHPILHSNI 973


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 457 ELGELGALGCTIKGYGCAGVSYVTY 531
           E GEL  +GC +K +GC  +    Y
Sbjct: 719 ETGELHIVGCRVKVFGCEPILQYVY 743


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 510 WSFLRYVWSHYKRTRW 557
           WSF+   WS++K  +W
Sbjct: 33  WSFMANTWSNFKHIKW 48


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 335 PSKLNGSTQSKVTFAFLEYVVDNALMLFDLYIVES--IYLEVNDTIITHI 192
           PS L G   +   +   +YV+    +L  + I+ES  I+L+ +  II +I
Sbjct: 402 PSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIFLQASLVIIPYI 451


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +1

Query: 187 HCICVIMVSLTSKYILST 240
           +C+  I+++LT+KY+LS+
Sbjct: 20  YCMASILMTLTNKYVLSS 37


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 563 STPSSSLVMRPYVT*ETPAHP*PLMVQ-----PRAPNSPSSL*ISLWNTSFLFASTTR 405
           S+P S+ +  P  T  TP    PL+ +     P  P S  S  +S  N  FL +S+ R
Sbjct: 37  SSPGSTRLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFLDSSSQR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,824
Number of Sequences: 5004
Number of extensions: 56995
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)