Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30119
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    58   5e-09
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    53   2e-07
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579...    29   4.5  
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    28   7.8  

>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 33/101 (32%), Positives = 52/101 (51%)
 Frame = +1

Query: 316 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 495
           D + +D  L  +E+++R + RA   +++ P +        F      +L  LG  G TIK
Sbjct: 42  DYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGTIK 101

Query: 496 GYGCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSI 618
           GYGC G+S     +   E+  VD+S  + + V SSLAM +I
Sbjct: 102 GYGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTI 142


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/97 (34%), Positives = 49/97 (50%)
 Frame = +1

Query: 328 LDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGC 507
           LD  L ++EK ++   R +   ++ P + +      F   +  ++  LG  G TIKGYGC
Sbjct: 57  LDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGC 116

Query: 508 AGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSI 618
            G+S     +   E+  VD+S  S   VQS LAM SI
Sbjct: 117 PGLSGPACAMCFLEIARVDASIASFCLVQSCLAMVSI 153


>03_02_0131 -
           5796564-5796605,5797188-5797421,5798415-5798717,
           5799260-5799847,5800594-5800749,5800861-5800919,
           5801935-5802262
          Length = 569

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 582 DECAE*FG-NGFDLYVPELKTRNRNTYHAWL 671
           DECA  +G N FDL     KT  R TYH WL
Sbjct: 447 DECAWAYGMNIFDLAAWR-KTNIRETYHFWL 476


>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 517 SYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYRN*RPETEILT 660
           +Y  Y +I+R    V+   R+  SVQ ++   ++Y     RPE  IL+
Sbjct: 350 AYRLYEMISRSTSVVNQDGRTLPSVQGNIEFRNVYFSYLSRPEIPILS 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,714
Number of Sequences: 37544
Number of extensions: 309627
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)