Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30119
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    58   5e-09
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    33   0.17 
At5g15470.1 68418.m01811 glycosyl transferase family 8 protein c...    29   3.7  
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c...    28   4.9  
At4g29560.1 68417.m04215 expressed protein                             28   6.5  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    27   8.6  
At1g49405.1 68414.m05538 integral membrane protein, putative con...    27   8.6  

>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 33/101 (32%), Positives = 53/101 (52%)
 Frame = +1

Query: 316 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 495
           D ++ +  L  +E+A+R   R    +++ P + E      F   I  +LG +G  G +IK
Sbjct: 47  DYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK 106

Query: 496 GYGCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSI 618
           GYGC G+S     + T E+  VD+S  + + V SSL M +I
Sbjct: 107 GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTI 147


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 394 KLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYG---CAGVSYVTYGLITRELDGVD 564
           ++L   + A       R +YN   + G  G  ++G     C  +SYV   L+  ELDG D
Sbjct: 136 EVLDGTLTAQHQIEIRRYLYNHQNKDGGWGLHVEGNSTMFCTVLSYVALRLMGEELDGGD 195

Query: 565 SSYRSAMS 588
            +  SA S
Sbjct: 196 GAMESARS 203


>At5g15470.1 68418.m01811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 532

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 582 DECAE*FG-NGFDLYVPELKTRNRNTYHAWL 671
           +ECA  +G N FDL     KT  R TYH+WL
Sbjct: 408 EECAWAYGMNIFDLQAWR-KTNIRETYHSWL 437


>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 533

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 582 DECAE*FG-NGFDLYVPELKTRNRNTYHAWL 671
           +ECA  +G N FDL     KT  R TYH+WL
Sbjct: 409 EECAWAYGMNIFDLRTWR-KTNIRETYHSWL 438


>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 286 RNAKVTFDWVDPFNLDGQLHDDEKAVRDSFRAYCNEKL 399
           R  K  F+W+   +LD    D  K V DS   + +EKL
Sbjct: 126 RIPKPKFEWISNLDLDSADEDSMKQVFDSVPDWLSEKL 163


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 415 EANRNEVFHREIYNELGELGALGCTIKGYGCAGVSYVTYGLITRELDGVDSSYRSAMSVQ 594
           ++N +E+   + Y   G  G  G T  G GC     V YGL   +L+  D    S+++ +
Sbjct: 333 DSNADELTVLQSYLGRGIAGIQGPTYAGSGCFHTRRVMYGLSIDDLE--DDGSLSSLATR 390

Query: 595 SSLA 606
             LA
Sbjct: 391 KYLA 394


>At1g49405.1 68414.m05538 integral membrane protein, putative
           contains 4 transmembrane domains; contains Pfam PF04535
           : Domain of unknown function (DUF588)
          Length = 152

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 353 SSSWSCPSKLNGSTQSKVTFAFLEYVVDNALMLFDLYIVESI 228
           S+  SCP  +    Q   T AFL + +  +  LF+L+++ S+
Sbjct: 110 SNESSCPPTICNRYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,349
Number of Sequences: 28952
Number of extensions: 274031
Number of successful extensions: 561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)