Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30118
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 79 4e-16
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 55 1e-08
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 38 0.001
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 36 0.007
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 30 0.26
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 30 0.34
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 30 0.34
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 27 1.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.4
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 26 4.2
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 25 9.8
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 9.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.8
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 79.4 bits (187), Expect = 4e-16
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Frame = +2
Query: 101 EIAQETLEWIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFK 280
++ +E EWI + N D L + L+ G +LC++ E +++ ++ M F
Sbjct: 4 QLEKEAREWIEETLHTKLNAQLD---LLDQLQSGVILCRICKEALGANIR-YKESNMPFV 59
Query: 281 CMENINAFLE-AVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGRKAGNF--GK-PSI 448
MENI+AF+ A + + VP+Q+ FQT DL+ER+N V+ + S R A GK +
Sbjct: 60 QMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGL 119
Query: 449 GPKEADKNVRDFS-EEQLKAGQNVISLQYGTNKGQQSG---ISFGNRR 580
GPK A+K R FS ++Q + + V SLQYG+ G I+F RR
Sbjct: 120 GPKLAEKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRRR 167
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +2
Query: 113 ETLEWIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVKKINQTT-MAFKCME 289
E +WI + G G + L++G +L LV + QP + KI + + F+ +
Sbjct: 46 EAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 290 NINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSL 412
NIN FL+ + +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 38.3 bits (85), Expect = 0.001
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Frame = +2
Query: 32 EYRAGKAGINAEAQARIHSKYNDEIAQETLEWIRK-LTGEP-----ANTSGDADNLYEVL 193
E + G+ I + + H+ N+E +E ++ I L G+P + + ++
Sbjct: 91 EVKKGRITIKGSSSSVSHT-INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQC 149
Query: 194 KDGTLLCKLVNELQPGSV-------KKINQTTMAFKCMENINAFLEAVKKLG 328
KDG +L KL+N+ P ++ ++ N+ FKC+EN N + + K +G
Sbjct: 150 KDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 113 ETLEWIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVKKIN-QTTMAFKCME 289
E +W+ + T N + D+ + L +G +LC+L + P + ++ +
Sbjct: 69 EAKKWLEEETN---NEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTV 125
Query: 290 NINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSL 412
+NAF + +G+ F+T DL R N+ V+ CL +L
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 176 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQT 355
NLYE D + L K+ P K + KC+ +N ++E VKK G A E F+
Sbjct: 78 NLYESTHDISELHKIT----PILASKFLELEEQNKCLNTVNKYMEVVKKYGNKADE-FKA 132
Query: 356 IDL 364
+ L
Sbjct: 133 LKL 135
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 NLYEVLKDGTLLCKLVNELQPGSVKKINQTT-MAFKCMENINAFLEAVKKLGVP 334
+L + L DG LL +L+ + ++ + N+ M +EN+N LE +K G+P
Sbjct: 32 DLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMRVHRLENVNKALEYIKSKGMP 85
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 192 KTSYRLSASPEVLAGSPVNFLIHSRVSWAISSLYLLWILAWASALMPAFPAR 37
KT Y LS P+ L G+P NF + R + ++ LA A + +P P +
Sbjct: 869 KTQYSLSHDPD-LKGAPTNFTVPIRDMRLSAGAGFIYPLAAAISTIPGLPTK 919
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 27.5 bits (58), Expect = 1.8
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = +2
Query: 35 YRAGKAGI-NAEAQARIHSKYNDEIAQETLEWIRKLTGEPANTSGDADNLYEVLKDGTLL 211
+ G GI N +QA + + E A+ LE + L G+ D ++VL D ++
Sbjct: 163 FMGGSTGIGNITSQAEFNVYADPEAARLVLE-TKSLIGKLFMVPLDVT--HKVLLDANII 219
Query: 212 CKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSV 391
L P S + T+ + EN+ V V A LW +++Y V
Sbjct: 220 QLLRQHSNPFSSTLVELMTVFQQTYENVYGIRNGVPVHDVCAVALALWPSLWTSRSMY-V 278
Query: 392 VVCLQSL 412
V L SL
Sbjct: 279 TVSLDSL 285
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +2
Query: 119 LEWIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMEN-- 292
L+ +R + G+ T N Y + D + C L +L V+K+ + F C
Sbjct: 246 LKSMRCIIGQKIGTDFYLSNKYPI--DSVVHCLLSTKLL---VRKLAAELLTFLCYSEKP 300
Query: 293 --INAFLEAVKKLGVPAQETFQTIDLWERQ 376
INA ++ +K E+ DLW Q
Sbjct: 301 NGINAIMKCMKNFANLKVESMNVFDLWLSQ 330
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/59 (18%), Positives = 29/59 (49%)
Frame = +2
Query: 167 DADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQE 343
+ + +Y + + + LV+E + GS++ + T+ F C + +L + + +P +
Sbjct: 810 EVEGIYRISGSASQVRVLVDEFENGSIRMEHLTSDLFACTSVLKTYLHRLPEPVIPGTQ 868
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 464 DKNVRDFSEEQLKAGQNVISLQYGTNKGQQSGISF 568
D + D+ +Q AG + ++L+YG N Q +F
Sbjct: 179 DAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAF 213
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +2
Query: 71 QARIHSKYNDEIAQETLEWIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVK 250
++ + ND + +L + KLT EPA S + ++L L N + S
Sbjct: 317 ESHVPPSSNDTKQESSLIDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMSSTSNG 376
Query: 251 KINQTTMAFKCMENINAFLEAV 316
+N + + + N N+ L ++
Sbjct: 377 ALNSPSYSQAAIPNTNSSLTSI 398
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 125 WIRKLTGEPANTSGDADNLYEVLKDGTLLCKLVNELQPGSVKKINQ 262
W+ + E + D ++L VL+D + + V L + KKI Q
Sbjct: 44 WMDDVEWETLDAQKDPNSLLPVLRDASAVVNSVGILMENNYKKILQ 89
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 89 KYNDEIAQETLEWIRKLTGEPANTS 163
+Y+DE +ET I +L +P NT+
Sbjct: 112 EYSDEKDKETASLINQLIADPVNTT 136
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.8
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +2
Query: 176 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQT 355
N+++ DG + L E Q S+ + +K +E N L+ +KK+ VPA E+ +
Sbjct: 57 NVFDDFDDGYAI-DLTEEHQSSSLNNLK-----WKDVEGPN-ILKPIKKIAVPASESEED 109
Query: 356 IDLWERQNLYSV-VVCLQSLGRKAGNFGKPSIGPKEADKNV 475
D + + L + + QS A N ++ + NV
Sbjct: 110 FDDVDEEMLRAAEMEVFQSCQPLAVNTADTTVSHSTSSSNV 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,093
Number of Sequences: 5004
Number of extensions: 49682
Number of successful extensions: 204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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