Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30117
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 1e-35
SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3) 31 0.58
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 30 1.8
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 1.8
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 30 1.8
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 29 3.1
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3) 29 4.1
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51) 29 4.1
SB_11431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 5.4
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 28 5.4
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34) 28 7.1
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 28 7.1
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 28 7.1
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 146 bits (355), Expect = 1e-35
Identities = 73/115 (63%), Positives = 87/115 (75%)
Frame = +1
Query: 280 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTE 459
MRGIKGLV ETS+LD +E LPKA GG+EPLPEG+FWLL+TG+IPT+
Sbjct: 1 MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46
Query: 460 AQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYS 624
Q LSKEWAA+A+LP HVV MLNN P LHPMSQFSAA+TA+N+ESKF +AY+
Sbjct: 47 QQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFSAAITAMNTESKFVQAYN 101
>SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3)
Length = 851
Score = 31.5 bits (68), Expect = 0.58
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = +1
Query: 109 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRG 288
AC V RG +QTNL+ + + P+E + RK+ +++ T D G
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQPSEIQRKEASASRESVQTSDSESPAQEG 63
Query: 289 IKGLVWETSVLDADEGIRFRGLSIPECQQQ----LPKAKGGEEPLPEGLFWLLVTGDIPT 456
+ + S A EG R S + Q + E P EG + T D +
Sbjct: 64 RQSIQTSDSESPAQEGRRSVHSSDSDSPAQEGRLSVQTSDSESPAQEGRL-SVQTSDSES 122
Query: 457 EAQAKALSKEWAARAELPA 513
AQ LS + + +E PA
Sbjct: 123 PAQEGRLSVQ-TSDSESPA 140
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 136 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKV 246
RGL E+ +L+ +LQE K + +E ++ HG K+
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRKL 580
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 359 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 261
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 398
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 181 EKIPKEQEKIREFRKKHGSTKVGEVTVD 264
E+I QEKI+E RK +GS K T+D
Sbjct: 924 ERIRLLQEKIKEMRKLYGSLKAEVATID 951
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 310 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 399
+S+ DA IRF LS+PE + + PK+ G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901
>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 407
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 359 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 261
M P + + ++A+ TE++ T+PL+P P ++S
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 150
>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 151 EQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDAD 330
E L I + + E RE K + G ++ + +GL W+ S D D
Sbjct: 131 EHCRLMGIAVQYLINEGHNFRESDKICMKYEAGPCLGPVLDDTVLRARGLPWQAS--DQD 188
Query: 331 EGIRFRGLSIPECQQQL 381
FRGL+IP C ++
Sbjct: 189 VANFFRGLNIPSCVSRM 205
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 417
TVD++Y +RG LV + LD E ++F L +CQ P A+ + LP+
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPD 307
>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
Length = 1102
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 43 RSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFR 222
+S ++ + + SS L+ + K T T + L+ E T LK L+ EQ+
Sbjct: 801 KSEMMEKKMQDMASSSLM-MNKVITTTTDSINDLNEEMTELKIQLETGFETEQDLRTSLN 859
Query: 223 KKHGSTKVGE 252
+ G K+GE
Sbjct: 860 QAEGRIKLGE 869
>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
Length = 976
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 166 KSILQEKIPKEQEKIREFRKKHGSTK 243
K +++EK P E++K E +KKH S K
Sbjct: 109 KKVIKEKDPSEKKKDGESKKKHRSEK 134
>SB_11431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 109 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 255
AC V RG +QTNL+ + + P+E + I E ++K T G +
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQPI-EIQRKEACTGPGMI 51
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +1
Query: 4 RSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQE 183
RSRAS R L L S+ + +++ S +C TA++ A Q+ + + +E
Sbjct: 402 RSRASWRRLTDVLGSSMVSLSVATTPCSSWARFVFSCMTASISATDPIASQSVISHVSRE 461
Query: 184 KIPKEQEKIREFRKKHGSTKVGE 252
+ + ++ I+ + +K G+
Sbjct: 462 REDRLEQGIQSENMRKLRSKAGD 484
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 67 LFRITSSRLVELQKACPTA-TVLLRGLSAEQTNLKSILQEKIPKEQEKIR 213
L + R+ EL+ A A + + G+ A++ + K++ EKI KE+EK++
Sbjct: 297 LIQTLQKRIKELESAGTQAGSKIDTGMGAKRKDSKAVDPEKIAKEKEKLQ 346
>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
Length = 264
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -1
Query: 185 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 72
F W +L FV S + PRSR G C STS+ ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176
>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 37 SLRSAALKMALFRITSSRLVELQKACPTATVLLR 138
SLR A+ ++ RI S +V L+KA +LLR
Sbjct: 33 SLRKASERVVNLRIASESMVNLRKASERMVILLR 66
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -1
Query: 356 DRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCF 225
D+P IPS SST S MPP +ST T P P F
Sbjct: 789 DQPIPAIPSLMSSTLTSSISTTSTGMPPASLSTPT-PFFTHPGF 831
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 361 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAAR 498
P C+ LPK +G +P G W+LV G+ +A K+ W ++
Sbjct: 568 PACRM-LPK-EGEPISIPNGTPWILVEGNSAIQANPKSKINCWISK 611
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.5 bits (58), Expect = 9.4
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Frame = +1
Query: 76 ITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 255
+ SS+L K T L+ E NLK LQ+K+ + ++ E R K+
Sbjct: 1896 LDSSKLKTEAKILREETERLKAQLEETMNLKEELQDKLHTAEHELFEARTSEEKAKIEHR 1955
Query: 256 TVDMMYGGMRG-IKGLVWET-SVLDADEGIRFRGLSIPECQQQLPKAKGGEEPL 411
D+ +R K E L A+E R S + Q QL KA + L
Sbjct: 1956 DKDIELAALRKYFKDTESELHRKLTAEESARL--ASENQLQNQLSKASTAVDDL 2007
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,885,158
Number of Sequences: 59808
Number of extensions: 376908
Number of successful extensions: 1300
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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