Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30117
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...   233   6e-62
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    31   0.67 
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    31   0.67 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    31   0.89 
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    30   1.2  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    28   4.8  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   4.8  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   4.8  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       28   4.8  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...    27   8.3  
AL117202-16|CAD91710.1|  121|Caenorhabditis elegans Hypothetical...    27   8.3  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    27   8.3  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    27   8.3  

>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score =  233 bits (571), Expect = 6e-62
 Identities = 111/189 (58%), Positives = 142/189 (75%), Gaps = 1/189 (0%)
 Frame = +1

Query: 61  MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 237
           MA+ R+ +  ++ + +  P +T      SAE  TNLK +L +KIP    K++ FR +HGS
Sbjct: 6   MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59

Query: 238 TKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 417
           T V  V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60  TVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPE 119

Query: 418 GLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNS 597
            ++WLL TGD+P+EAQ  A++KEW ARA+LP HVV ML+N P  LHPM+QF AA+ ALN+
Sbjct: 120 AIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNN 179

Query: 598 ESKFAKAYS 624
           ESKFA AY+
Sbjct: 180 ESKFAGAYA 188


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 64  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 228
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 64  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 228
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 115  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 252
            PT+T+ L  L   + NL S+  E+  K +EKI + R++   + + E
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRRKQESDLAE 2469



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 115  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 228
            PT+T+ L  L   + NL S+  E+  K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 350 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 231
           P +  P    ST   Q RP  PR  PY+  + T+   +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 388 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 507
           A G E+PLPE  +W  V+     EA AKA  K     AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 377 CCWHSG-MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCFFRN 216
           C W S  +  P+K++PS    T   Q      ++ P  +STV+       C+FR+
Sbjct: 585 CSWFSSSLQNPKKQVPSGVYKTIAEQHLDEFEQIKPEEVSTVSD------CYFRS 633


>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 64   ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 243
            +L ++  SR+ EL+        ++  L A+   +++I QEK+ + Q+   EF +   +  
Sbjct: 1019 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1078

Query: 244  VGEVTVDMM 270
            + +   DM+
Sbjct: 1079 MWQAEKDML 1087


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 64   ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 243
            +L ++  SR+ EL+        ++  L A+   +++I QEK+ + Q+   EF +   +  
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080

Query: 244  VGEVTVDMM 270
            + +   DM+
Sbjct: 1081 MWQAEKDML 1089


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 142 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 231
           L+ E  NLK  L++K   E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 305 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 210
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 305 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 210
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 64   ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 243
            +L ++  SR+ EL+        ++  L A+   +++I QEK+ + Q+   EF +   +  
Sbjct: 1021 SLEKVNHSRIEELESRLTQRERVVESLEADLAAVRNIEQEKLDELQKLKEEFDELKKAET 1080

Query: 244  VGEVTVDMM 270
            + +   DM+
Sbjct: 1081 MWQAEKDML 1089


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 152 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 27
           S  R +S+TVA  H +CN+    + +L  AI +  ++K P HK
Sbjct: 34  SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75


>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 223 KKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQL 381
           +KHG   +GE+ + ++      I     +  VL  DEGI FRGL I +  Q L
Sbjct: 89  RKHGG--LGEMNIPVLADTNHQISR---DYGVLKEDEGIAFRGLFIIDPSQNL 136


>AL117202-16|CAD91710.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D3A.20 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 410 YPKVFSGFSSLAIYPPKRKLK 472
           +P++F GFSS+  +PP  K K
Sbjct: 30  FPRLFKGFSSIFHFPPLNKPK 50


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 206 FSCSLGIFSWRILFKFVCSALRPRSRTV 123
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 206 FSCSLGIFSWRILFKFVCSALRPRSRTV 123
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,539
Number of Sequences: 27780
Number of extensions: 271617
Number of successful extensions: 975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)