Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30114
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    68   2e-12
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    36   0.006
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.51 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    26   6.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.3  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   8.3  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
 Frame = +1

Query: 196 GQLQGRIVNSPSGKA-FYSFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ 369
           G L G  V   +GK   + F GI YAKPP+G LR++ P + E  +D   D      +C Q
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 370 ------IDPVFAKSYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWGSG-NTNLY 522
                  + V    +  DE+CLFLN++ P+ +      PV+ +IHGG  + G+  +    
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121

Query: 523 GP-DFLVD---RDVVVMTINYRCGALGFLS----LNTPEVPGNAGIKDIVQAIRWVKDNI 678
            P D   D      ++++  +R    GFL+    L       N G  D    + W   +I
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHI 181

Query: 679 HHFGGNAGNLTIFG 720
             FGGN  N+ + G
Sbjct: 182 ESFGGNKENIAVGG 195


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 460 PVMIWIHGGGFKWGSGNT-NLYGPDFLVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGI 636
           P  +W HGGG+  G+ NT N +          VV+ ++YR           PE P  A I
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL---------APEDPFPACI 151

Query: 637 KDIVQAIRWVKDNIHHFGGNAGNLTIFG 720
            D  +A+ +  +N    G N   + + G
Sbjct: 152 DDGWEALLYCYENADTLGINPNKIAVGG 179


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 262 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 381
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 610 PEVPGNAGIKD-IVQAIRWVKDNIHHFGGNA 699
           P +P  + + D ++ ++R V  +I HFGG+A
Sbjct: 362 PSIPKVSVMDDTLIDSVRGVPGDISHFGGDA 392


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 338 MPRRKGTCVLKSIQSSRNPMSAMKTAC 418
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 319 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 423
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,513
Number of Sequences: 5004
Number of extensions: 79498
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)