Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30113
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0686 + 20697493-20697927                                         49   4e-06
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    28   8.7  

>07_03_0686 + 20697493-20697927
          Length = 144

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
 Frame = +2

Query: 212 KDFNDVLDDIVLGEEKES----KSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGFYW 379
           KD  D L+  VL +E       K+ Y EG  +G E    EG  +G   G ++G ELGFY 
Sbjct: 6   KDDFDFLEPSVLLDETHYQTGFKNGYSEGLVSGKE----EGRQVGLKNGFQVGEELGFYQ 61

Query: 380 STVNECLELNETSDAKLSEKIIAQLLKVKELIDTFPPNNSEDHDILGMADAVRAQYKKAC 559
             ++    L        S ++   + ++  L+ ++P +N ED  +  + + +R +++   
Sbjct: 62  GCLDVWTSLVSIDQDAFSARVRKNIEQLAALLRSYPLSNPEDEQVQDIMEKIRLKFRVIT 121

Query: 560 ALL 568
           A L
Sbjct: 122 ASL 124


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 573 IFNKAQAFLYCALTASAIPSMS--WSSELLGGKV 478
           +FN     L   L +S I SM   W+SEL+GGK+
Sbjct: 423 LFNVLLQLLDAPLISSKIDSMENRWASELIGGKL 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,463
Number of Sequences: 37544
Number of extensions: 281080
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)