Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30113
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_18877| Best HMM Match : DUF758 (HMM E-Value=0) 28 6.7
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 6.7
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 28 6.7
>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G E+ + SY+ G++ E GN Y GY RG + G E G+
Sbjct: 136 GYERSYERSYERGYKRSYERGNKRSYERGYKRGYKRGYERGY 177
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ + SY G++ G + G GY GY RG E G E G+
Sbjct: 278 ERSYERSYKRGYKRGYKRGYKRGYERGYERGYERGYERGY 317
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ K Y G++ G + G GY GY RG E G E G+
Sbjct: 282 ERSYKRGYKRGYKRGYKRGYERGYERGYERGYERGYERGY 321
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ + SY+ ++ G + G GY GY RG E G E G+
Sbjct: 274 ERSYERSYERSYKRGYKRGYKRGYKRGYERGYERGYERGY 313
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 266 KSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
K Y G++ G E G GY GY RG E G E +
Sbjct: 290 KRGYKRGYKRGYERGYERGYERGYERGYERGYERSY 325
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G ++ K Y G+ G E G GY GY RG E E +
Sbjct: 288 GYKRGYKRGYKRGYERGYERGYERGYERGYERGYERSYERSY 329
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ + SY+ + + G GY GY RG E G E G+
Sbjct: 270 ERSYERSYERSYERSYKRGYKRGYKRGYKRGYERGYERGY 309
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G ++ K Y+ G+ G E G GY GY R E E +
Sbjct: 292 GYKRGYKRGYERGYERGYERGYERGYERGYERSYERSYERSY 333
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGFYWSTV 388
E+ +K SY+ G++ G + G GY Y R E E + S V
Sbjct: 154 ERGNKRSYERGYKRGYKRGYERGYERSYKRSYERSYERSYKRSYV 198
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 266 KSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
K SY+ ++ G E G Y GY RG + G E +
Sbjct: 90 KRSYERSYKRGYERGYKRSYERGYKRGYKRGYERSY 125
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ K Y+ G++ E G GY GY R E E +
Sbjct: 94 ERSYKRGYERGYKRSYERGYKRGYKRGYERSYERSYERSY 133
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAE 352
E+ K SY+ G + E G GY GY RG E
Sbjct: 146 ERGYKRSYERGNKRSYERGYKRGYKRGYERGYE 178
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G E+ K SY+ G++ G + G Y Y R + G E +
Sbjct: 100 GYERGYKRSYERGYKRGYKRGYERSYERSYERSYKRGYERSY 141
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
E+ + SY+ + E GY GY RG + G E G+
Sbjct: 266 ERSYERSYERSYERSYERSYKRGYKRGYKRGYKRGYERGY 305
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 254 EKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
++ K SY+ ++ G E GY Y R + G E G+
Sbjct: 66 KRSYKRSYERSYKRGYERSYKRGYKRSYERSYKRGYERGY 105
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G ++ + SY G+ G + GY GY RG E E +
Sbjct: 88 GYKRSYERSYKRGYERGYKRSYERGYKRGYKRGYERSYERSY 129
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
G E+ + SY+ ++ G E Y GY R E G + +
Sbjct: 120 GYERSYERSYERSYKRGYERSYERSYERGYKRSYERGNKRSY 161
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 272 SYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGF 373
SY G++ E GY GY R E G + G+
Sbjct: 84 SYKRGYKRSYERSYKRGYERGYKRSYERGYKRGY 117
>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +2
Query: 248 GEEKESKSSYDEGFRAGIEAGNIEGYHLGYHRGAELGRELGFYWSTVNECLELNE 412
G E+E++ +EG G E N EG G G E G E+G E E NE
Sbjct: 114 GNEEENEEGNEEGNEEGNEKENEEGNEEGNEEGNEEGNEVGNEEGNEEENEERNE 168
>SB_18877| Best HMM Match : DUF758 (HMM E-Value=0)
Length = 189
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 410 ETSDAKLSEKIIAQLLKVKELIDTFPPNNSEDHDILGMADAVRAQYKKA 556
E S K +EK+I L+K+ I NN + + + +A+ R +K A
Sbjct: 51 EASSKKEAEKLIKDLIKIVVKISILFRNNQFNKEEIMLAEKFRKNFKSA 99
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 209 SKDFNDVLDDIVLGEEKESKSSYDEGFRAGIEAG 310
+KD +D D +++ EEKE + +EG A + +G
Sbjct: 1998 NKDNSDSEDSVIVEEEKEEEELNEEGTDASVVSG 2031
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 582 FEGIFNKAQAFLYCALTASAIPSMSWSSELLGGKV 478
F ++N QAF AL ++ S +W +LLGG++
Sbjct: 423 FRAVYNSIQAFPNAALALNSNTSHAW-PQLLGGEI 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,409
Number of Sequences: 59808
Number of extensions: 344268
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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