Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30111
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    31   0.69 
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    30   1.6  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    28   6.4  
04_04_0893 - 29152150-29153156,29153234-29153561,29153645-291538...    28   8.5  

>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 81  LHRLHWELFVFVLDFNLEKASYVIR--YFSLTKNLVLESL*KYDFIHSIRNALFACLFM 251
           LH   WEL VFVL      + +VIR   F + +N +L     Y F++ +R+A+   L++
Sbjct: 394 LHLWKWELLVFVLICGRLVSGWVIRIAVFCVERNFLLRKRVLY-FVYGVRSAVQNALWL 451


>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 81  LHRLHWELFVFVLDFNLEKASYVIR--YFSLTKNLVLESL*KYDFIHSIRNALFACLFM 251
           LH   WEL VFVL      + +VIR   F + +N +L     Y F++ +R A+   L++
Sbjct: 349 LHLWKWELLVFVLICGRLVSGWVIRICVFFVERNFLLRKKVLY-FVYGVRRAVRNVLWL 406


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 206 FYSFHSQCSVCLPFHVQKSVFQLFFT 283
           ++S+H    + L FH++K +   FFT
Sbjct: 266 YWSYHVVSEIWLSFHIEKEIIAQFFT 291


>04_04_0893 -
           29152150-29153156,29153234-29153561,29153645-29153879,
           29154149-29154194,29154579-29154711
          Length = 582

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 671 WTSTITSKTLVVELTGKHPYSARAWTPGGN 582
           W  T+ S T       +  YS R W PGG+
Sbjct: 28  WAPTLASHTNSTYFGKQEEYSVREWRPGGD 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,023,506
Number of Sequences: 37544
Number of extensions: 313524
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)