Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30111
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32750.1 68417.m04660 expressed protein                             29   2.3  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    29   3.1  
At4g30130.1 68417.m04283 expressed protein contains Pfam domains...    28   5.4  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    28   7.1  
At4g15380.1 68417.m02350 cytochrome P450 family protein similar ...    27   9.4  

>At4g32750.1 68417.m04660 expressed protein
          Length = 293

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 172 KIWFWKVYKNTILFIPFAMLCLLAFSCTEISFPIIFYRPIILLHTRFC 315
           + W  K+ + T++ I  A LC + F+CT +S  I+F  P  +L   FC
Sbjct: 26  RAWI-KLQRPTLVSI-VAFLCFVIFTCTIVSLKIVF--PSNVLKRPFC 69


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 468 KLLHYYVAKRLCTFQAKYKLDKYYTINLN*LKQLNHFRKLTYNNSNIIMELAK 310
           KL + +    L   +A+Y  ++ YT   N L  +N F++L +   N IME  K
Sbjct: 85  KLAYLHEPGVLLNLKARYNANEIYTYTGNILIAVNPFKRLPHLYGNEIMEQYK 137


>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 725

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 666 VNDHLEDLGCRVDRETPVLCQGLDPRR 586
           VN+   D GC+++ E+   C G   RR
Sbjct: 240 VNEEFTDSGCKIENESDKNCNGTQERR 266


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 553 SSYTLLPEVRFPPGVQALAEYGCFPVNSTTKVFEVIVDVQRPRS 684
           +S T +PE  FPP +Q L  +GC  + + +K    I+  ++  S
Sbjct: 873 TSLTSVPE--FPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHS 914


>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 517

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 96  WELFVFVLDFNLEKASYVIRYFSLTKNLVLESL*KYDFIHSIRNALFACLFMYRNQFSNY 275
           W   + V  F  E      R+  L +++++E   K D  H   + + A L  YR++ + Y
Sbjct: 231 WFKKLVVSLFKKETTVISYRFDELLESILVEHEKKLDVHHQRTDLMDALLAAYRDENAEY 290

Query: 276 FLQANH 293
            +  NH
Sbjct: 291 KITRNH 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,376
Number of Sequences: 28952
Number of extensions: 265800
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)