Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30109
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       31   1.3  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   4.1  
01_06_0626 + 30701538-30701939                                         28   7.2  
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849     28   9.5  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 3   SAMGSCATGPSCRTATPLAITHETTTSTSQLPHSSKIPLPAVTN 134
           S  G+C    S  T TP + +++ T STS  P ++++ +P  T+
Sbjct: 702 SPTGACKFSTSTSTFTPTSFSNDLTASTSTFPTTTRL-IPTATS 744


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 523 CYKYQCMGYLQLN-FKRIHF 467
           CY Y C+GYL+++ F R HF
Sbjct: 154 CYVYSCIGYLKVDIFDRSHF 173


>01_06_0626 + 30701538-30701939
          Length = 133

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  TTTSTSQLPHSSKIPLPAVTNTGKLWSSHYRT 167
           TTT TS  P S+ +  P++T TG   S H+ T
Sbjct: 57  TTTCTSTNPMSTTVMPPSLTATGTDTSDHHAT 88


>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
          Length = 365

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   SAMGSCATGPSCRTATPLA-ITHETTTSTSQLPHSSKIPLPA 125
           +A  +  T P+  ++  +A I H TTT+T+  P  + +P PA
Sbjct: 228 AAAATTPTTPATPSSNTIAVINHATTTTTTTNPFPTDVPPPA 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,159
Number of Sequences: 37544
Number of extensions: 351962
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)