Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30109
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote...    31   0.64 
At2g10950.1 68415.m01169 BSD domain-containing protein contains ...    28   6.0  
At2g36090.1 68415.m04432 F-box family protein contains Pfam PF00...    28   7.9  

>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3360289 from [Zea mays]
           (Plant Mol. Biol. 37 (5), 749-761 (1998))
          Length = 719

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 482 QTNSFQSSAASATRSLGKLVKLNKMVGPLDLNMDIGSHDSDSKTIREK 339
           + NS QSS++  T+ L   + +N    P+D N      DS  K I  K
Sbjct: 344 ENNSIQSSSSVETKKLDTSLSINLRPPPIDRNKSFDDEDSTRKPIAVK 391


>At2g10950.1 68415.m01169 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 336

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
 Frame = +3

Query: 21  ATGPSCRTATPLAITHETTTSTSQLPHSSKIP-----LPAVTNTGKLWSSHYRTCMIYF- 182
           +T P C T  PL++  E   S +Q  H+S I      L AV N    +       +IYF 
Sbjct: 123 STKPGCWTDFPLSLDTEFELSEAQRAHASAIEDLVPGLVAVKNQVSSYMDDEHFWLIYFI 182

Query: 183 LK*PNLSSN--MICMKCKQFMR*E*LLLQ 263
           L  P L+ +   +   CK F   + LLL+
Sbjct: 183 LLMPRLNGHDFELLATCKVFETRDQLLLK 211


>At2g36090.1 68415.m04432 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 317

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 106 DECGSCEVDVVVSWVIASGVAVRHEGPVAHEPIAL 2
           D C   E D+ +SW++   +  R     +H P+++
Sbjct: 155 DTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSV 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,998
Number of Sequences: 28952
Number of extensions: 309506
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)