Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30106
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    31   0.13 
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    29   0.51 
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   2.0  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.0  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.3  

>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
 Frame = -1

Query: 358 VQSNPDVLSEHLRIL*RH--DPWSDESGXRDRVTPLPPSSTPIHMK*PYA--SL*LNKKQ 191
           + SNP++ + +L        D  ++ESG      P    STPIH   P +  +   +++Q
Sbjct: 266 LSSNPELSNSNLLAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQ 325

Query: 190 AISITRAQG---RRCNKNTSNAIKTNFTVVKRSSTH 92
            ISI +AQ    ++ +K  +N  KT  ++ K  + H
Sbjct: 326 TISILQAQSPFLKKSDKERANLNKTMVSINKSINIH 361


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 148 NTSNAIKTNFTVVKRSSTHHQRCR*YYHLSAFCFYCLNGWT 26
           NT    K + T+ K    +H  C+   +   FC+ CL  WT
Sbjct: 287 NTKECPKCSTTIEKNGGCNHMTCKKCKY--EFCWVCLGPWT 325


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 132 LKLILPL*KDHPPIIKGVVSTIICLR 55
           L+++L L  DH P + G ++TII  R
Sbjct: 410 LEMVLQLTADHGPCVSGAMNTIITTR 435


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 55  FCFYCLNGWTS 23
           FC+ C+NGWTS
Sbjct: 275 FCWSCINGWTS 285


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   LNIKWPVSSSTHLSNKNKTQTDDSTNDTFDDGWM 102
           +N+K  + +S     + K+Q  D  N  F DGW+
Sbjct: 100 INLKPGIDASFGSFGELKSQMVDVGNSVFGDGWL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,824
Number of Sequences: 5004
Number of extensions: 45477
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)