Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30106
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_40921| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             28   5.0  

>SB_49215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -2

Query: 309 VMTLGVMSPVXGTESPPFPPHLPQYT*S---DLTRLCS*TKNR--PSQSHVRKAVDVTKT 145
           ++TLG    V G++  P P H+P  T S   D TR+    + R    Q H +   D+ +T
Sbjct: 272 IITLGAKGSVIGSQQNPMPLHIP-VTPSEAVDTTRIYRDLERRIWAHQRHTKTKTDIKET 330

Query: 144 RR 139
            R
Sbjct: 331 SR 332


>SB_40921| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 268 VTPLPPSSTPIHMK*PYASL*LNKKQAISITRAQGRRCNKNTS 140
           VT LPP  TP +   P  ++  ++KQ+ + T    +RCN+  S
Sbjct: 296 VTQLPPKPTPYNWTAPTLTVPAHRKQSTAFT---PKRCNQRPS 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,281
Number of Sequences: 59808
Number of extensions: 343046
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)