Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30106
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical
           protein F18A12.3 protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +2

Query: 281 TGLITPRVMTSQYPQVFRQN 340
           +G+ITP+++T+++P +F  N
Sbjct: 297 SGMITPKIITNKHPLLFETN 316


>AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical
           protein C27A12.7b protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -1

Query: 154 NKNTSNAIKTNFTVVKRSSTHHQRCR*YYHLSAFCFYCLNGWT 26
           N NT    K   T+ K    +   C+       FC+ CL  WT
Sbjct: 215 NSNTKECPKCMATIEKNGGCNQITCKNTGCKFQFCWMCLGPWT 257


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -1

Query: 154 NKNTSNAIKTNFTVVKRSSTHHQRCR*YYHLSAFCFYCLNGWT 26
           N NT    K   T+ K    +   C+       FC+ CL  WT
Sbjct: 279 NSNTKECPKCMATIEKNGGCNQITCKNTGCKFQFCWMCLGPWT 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,966
Number of Sequences: 27780
Number of extensions: 260988
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)