Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30106
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14720.1 68418.m01727 protein kinase family protein contains ...    28   5.4  
At4g05636.1 68417.m00878 hypothetical protein                          28   5.4  
At2g38770.1 68415.m04760 expressed protein                             28   5.4  
At1g70430.1 68414.m08103 protein kinase family protein contains ...    27   9.4  

>At5g14720.1 68418.m01727 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 674

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 302 VMTSQYPQVFRQNVRITLHXQLFASLIYVYXYXWVKDYLSLGDIFVNITG 451
           ++ S YP  F + V  TL  +   +L+Y++ +  +   +  G+I ++  G
Sbjct: 102 IIKSSYPDGFEEPVIATLLRETLKALVYLHAHGHIHRDVKAGNILLDSNG 151


>At4g05636.1 68417.m00878 hypothetical protein
          Length = 193

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 280 HRTHHSKGHDVTVSSGVQTK-RPD 348
           H  HHS GH +T S   Q + +PD
Sbjct: 117 HHQHHSTGHSITSSQSTQIRTQPD 140


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 364 LXVQSNPDVLSEHLRIL*RHDPWSD 290
           L ++   DV+   L+++ RHDPW+D
Sbjct: 419 LSLEDLRDVVCSKLKLVSRHDPWAD 443


>At1g70430.1 68414.m08103 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 594

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 302 VMTSQYPQVFRQNVRITLHXQLFASLIYVYXYXWVKDYLSLGDIFVNITG 451
           +M S YP+   Q +  TL  ++  +L+Y++    +   +  G+I ++  G
Sbjct: 102 LMKSVYPEGLEQPIIATLLREVLKALVYLHRQGHIHRDVKAGNILIHSKG 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,145
Number of Sequences: 28952
Number of extensions: 235899
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)