Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30104
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    25   8.2  

>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 411 FCLTYSFKSDKLEICLFINFFD 476
           FCL+ S  S++LEIC+F  F D
Sbjct: 499 FCLSCSSYSEELEICVFCEFLD 520


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 25.4 bits (53), Expect(2) = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  PKPRPKSRPADLPRHRL-VQDQRIQIRL 142
           PKP+P+ +P   P H+L ++   + +RL
Sbjct: 315 PKPKPRPKPELKPNHKLKLKHLSLSVRL 342



 Score = 20.6 bits (41), Expect(2) = 8.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 59  RPKPRPKSRP 88
           RPKP P+ +P
Sbjct: 298 RPKPNPRPKP 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,177
Number of Sequences: 27780
Number of extensions: 250402
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)