Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30103
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.4  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   7.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   7.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 57  TNSFC*NGHV*CLAAEMPTQICLQN 131
           T  FC NG+  C   E P   C  N
Sbjct: 694 TTCFCENGNNKCFTMECPQVTCPDN 718


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 104 FGSQALNM---PISTKRISFVCRTNFDNPAVFLNPW 6
           FG   LN+   PI  K +SF+    + N A+ +N W
Sbjct: 571 FGGFFLNVSSIPIYFKWLSFLSWFRYGNGALMINQW 606


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 104 FGSQALNM---PISTKRISFVCRTNFDNPAVFLNPW 6
           FG   LN+   PI  K +SF+    + N A+ +N W
Sbjct: 571 FGGFFLNVSSIPIYFKWLSFLSWFRYGNGALMINQW 606


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  AAEMPTQIC--LQNSFSIS*GRQSHIKRETVESKRKTITNRH 215
           AA +P+ +   +++ F    GRQ++ + +T+E +++   NR+
Sbjct: 225 AAALPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRY 266


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  AAEMPTQIC--LQNSFSIS*GRQSHIKRETVESKRKTITNRH 215
           AA +P+ +   +++ F    GRQ++ + +T+E +++   NR+
Sbjct: 227 AAALPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRY 268


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 402 ENRPGDETFEYSFNGTAK 455
           ENRP DE F  +  G  +
Sbjct: 35  ENRPADEYFRLTTEGDCR 52


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 402 ENRPGDETFEYSFNGTAK 455
           ENRP DE F  +  G  +
Sbjct: 35  ENRPADEYFRLTTEGDCR 52


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 414 LVYFLQVKRRLVNLLLHSSNLKADVLLITMS 322
           L  ++  K   VN+L+H S L   V  +T++
Sbjct: 131 LAVWVPYKHLYVNILIHLSGLVTIVATLTVT 161


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 414 LVYFLQVKRRLVNLLLHSSNLKADVLLITMS 322
           L  ++  K   VN+L+H S L   V  +T++
Sbjct: 131 LAVWVPYKHLYVNILIHLSGLVTIVATLTVT 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,407
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)